View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868-Insertion-15 (Length: 564)
Name: NF4868-Insertion-15
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868-Insertion-15 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 421
Target Start/End: Complemental strand, 30097384 - 30096971
Alignment:
| Q |
8 |
gtgttttttccgatagcttggaactaaagcgagaatttatactataaccatgtttctaaggaaggtgaataaaaagctgaaagtaatttgtttttgttaa |
107 |
Q |
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| T |
30097384 |
gtgtttttcccgatagcttctaactaaagcgagaatttatactataaccatgtttctaaggaaggtgaataaaaagctgaaagtaatttgtttttgttaa |
30097285 |
T |
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| Q |
108 |
ctatattatctatgtaaagaagaaagagattgcttgagtttgtgtgttggtactctttttgatgttacagttcaatgaggaataactctggtaactgatt |
207 |
Q |
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| T |
30097284 |
ctatattatctatgtaaagaagaaagagattgcttgagtttgtgtgttggtactctttttgatgttacagttcaatgaggaataactctggtaactgatt |
30097185 |
T |
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| Q |
208 |
tcaagtcatatatatcaaaagactttaatttgtcccttagaattagatgaaagtagaatcatataattatctacttaaagtaaggaatattcaatgtgat |
307 |
Q |
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| T |
30097184 |
tcaagtcatatatatcaaaagactttaatttgtcccttagaattagatgaaagtagaatcatataattatctacttaaagtaaggaatattcaatgtgat |
30097085 |
T |
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| Q |
308 |
gtgctggtaaagttaagtggaaaagaagcattcatgtttagtggaaaggataaaaagtgatgtgaaatactccttgcagggattaaatatttcaacttat |
407 |
Q |
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| T |
30097084 |
gtgctggtaaagttaagtggaaaagaagcattcatatttagtggaaaggataaaaagtgatgtgaaatactccttgcagagattaaatatttcaacttac |
30096985 |
T |
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| Q |
408 |
tctatactagaaac |
421 |
Q |
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| T |
30096984 |
tctgtacttgaaac |
30096971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 412 - 560
Target Start/End: Complemental strand, 30088683 - 30088535
Alignment:
| Q |
412 |
tactagaaactattaattagaatactcattattatcgcaagacggattcaacnnnnnnnnnnnnacaattagatgtgaaaaaacttaaaccgaattgatc |
511 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |||||||| |
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| T |
30088683 |
tacttgaaactattaattagaatactcattattattgcaagacggattcaacttttagttttttacaattagttgtgaaaaaacttaaaccaaattgatc |
30088584 |
T |
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| Q |
512 |
cacacacataagtataatttggatcgaatctaaatcaatcttacaaaac |
560 |
Q |
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|||||||||||||||||||| |||||||||||| |||| |||||||||| |
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| T |
30088583 |
cacacacataagtataatttagatcgaatctaagtcaaccttacaaaac |
30088535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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