View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4868-Insertion-16 (Length: 542)

Name: NF4868-Insertion-16
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4868-Insertion-16
NF4868-Insertion-16
[»] chr2 (5 HSPs)
chr2 (81-542)||(23395502-23395958)
chr2 (81-158)||(39707466-39707542)
chr2 (339-446)||(17658471-17658578)
chr2 (81-158)||(3496844-3496924)
chr2 (121-156)||(31750424-31750459)
[»] chr8 (4 HSPs)
chr8 (81-162)||(4835036-4835116)
chr8 (339-419)||(12958110-12958189)
chr8 (339-446)||(15682938-15683045)
chr8 (339-446)||(36994525-36994632)
[»] chr1 (6 HSPs)
chr1 (81-158)||(48915241-48915317)
chr1 (81-159)||(27907651-27907728)
chr1 (81-159)||(27032365-27032443)
chr1 (122-159)||(49177352-49177389)
chr1 (122-158)||(5398119-5398155)
chr1 (347-391)||(19238832-19238876)
[»] chr4 (3 HSPs)
chr4 (339-446)||(38766098-38766205)
chr4 (339-475)||(45994502-45994638)
chr4 (355-446)||(38844209-38844300)
[»] chr7 (13 HSPs)
chr7 (81-158)||(23185968-23186044)
chr7 (81-154)||(16876782-16876854)
chr7 (347-420)||(30614715-30614787)
chr7 (81-158)||(32279358-32279434)
chr7 (344-475)||(19477279-19477410)
chr7 (121-155)||(9488866-9488900)
chr7 (81-158)||(18867993-18868068)
chr7 (339-447)||(13254126-13254234)
chr7 (339-447)||(31492111-31492219)
chr7 (339-475)||(46373653-46373789)
chr7 (427-475)||(7265426-7265474)
chr7 (372-475)||(8839339-8839442)
chr7 (336-392)||(28828787-28828843)
[»] chr6 (3 HSPs)
chr6 (344-475)||(21910185-21910316)
chr6 (344-473)||(278374-278502)
chr6 (344-447)||(12411156-12411259)
[»] chr3 (2 HSPs)
chr3 (81-156)||(4037092-4037166)
chr3 (81-158)||(49279438-49279514)
[»] chr5 (2 HSPs)
chr5 (81-156)||(37515628-37515702)
chr5 (339-388)||(36212963-36213012)


Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 81 - 542
Target Start/End: Complemental strand, 23395958 - 23395502
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtacccaatgacaccaatggcatcaaaagccaatggcacccaagtgctaccccctctaaagacaccgggagctc 180  Q
    ||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  23395958 ttgttaagagagagatagacacaaatgtacc-aatgacaccaatggcaccaaaagccaatggcacccaagtgccaccccttctaaagacactgggagctc 23395860  T
Q  181 tccagatttaaagacgacaccgcgttttcaagcgtataagaagaaatggattgtgtattaaaaccttataagcaattaaaatcttaccgtcttctaaatt 280  Q
    || |||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23395859 tctagatttaaagacgacaccgcatt--caagcgtataagaagaaatggattgtgtattaaaaccttataagcaattaaaatcttaccgtcttctaaatt 23395762  T
Q  281 tcacacgacttttctttgggataaatcaggtatcctccacgcgcgcaactaatttattgagccttgtgagacctaaatgggcgacaaactatccctatga 380  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  23395761 tcacacgacttttctttggcataaatcagatatcctccacgcgcgcaactaatttattgagccttgtgagacctaaatgggcgacaaactattcc--tga 23395664  T
Q  381 gttttaacgctgtttgcatgcccaatgctagattcaaactaggatcttggttaaactataagagaccagcgttatctcatataaacgctcttggggtaat 480  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||  | |||||||||||||||||||||||||||    
T  23395663 gttttaacgctgtttgcatgcccgatgctagattcaaactaggacctttgttaaactaaaagagaccagtatcatctcatataaacgctcttggggtaat 23395564  T
Q  481 ttcacacgactttcttcataagaaattgcatttaaaaatctcaattcaataaacacccctta 542  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  23395563 ttcacacgactttcttcataagaaattgtatttaaaaatcgcaattcaataaacacccctta 23395502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 39707466 - 39707542
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtacccaatgacaccaatggcatcaaaagccaatggcacccaagtgctaccc 158  Q
    ||||||||||||||| |||||||||| |||| | || ||||||||||| |||||  | ||||||||||||||||||||    
T  39707466 ttgttaagagagagatagacacaaagttaccta-tggcaccaatggcaccaaaaaactatggcacccaagtgctaccc 39707542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 446
Target Start/End: Complemental strand, 17658578 - 17658471
Alignment:
Q  339 gagccttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattcaaact-aggatcttggttaaact 437  Q
    |||||||||| |||  ||||||||  |||||| |||||| || |||||||| |||| |||||||||| ||||||||| || | ||||||||||||||| |    
T  17658578 gagccttgtgggactcaaatgggcagcaaactctccctaagaattttaacgttgtt-gcatgcccaaggctagattcgaattcaggatcttggttaaatt 17658480  T
Q  438 ataagagac 446  Q
    | |||||||    
T  17658479 agaagagac 17658471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 3496844 - 3496924
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtaccca---atgacaccaatggcatcaaaagccaatggcacccaagtgctaccc 158  Q
    ||||||||||||||| |||||||||| |||| |   ||||||||||||||| ||||   | ||||||||||||||||||||    
T  3496844 ttgttaagagagagatagacacaaagttacctacctatgacaccaatggcaccaaagaactatggcacccaagtgctaccc 3496924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 31750459 - 31750424
Alignment:
Q  121 caatggcatcaaaagccaatggcacccaagtgctac 156  Q
    |||||||| |||||||||||||||||||||||||||    
T  31750459 caatggcaccaaaagccaatggcacccaagtgctac 31750424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 4835036 - 4835116
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtacccaatgacaccaatggcatcaaaagccaatggcacccaagtgctaccccctc 162  Q
    ||||||||||| ||| ||||||||| ||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  4835036 ttgttaagagaaagatagacacaaaagtatc-aatggcaccaatggcaccaaaagccaatggcacccaagtgctaccccctc 4835116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 419
Target Start/End: Original strand, 12958110 - 12958189
Alignment:
Q  339 gagccttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattcaaac 419  Q
    |||| ||||| |||| ||||||||||||  || |||||| ||||||||||||||  ||||||||||||||| |||||||||    
T  12958110 gagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctg-ctgcatgcccaatgctggattcaaac 12958189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 446
Target Start/End: Complemental strand, 15683045 - 15682938
Alignment:
Q  339 gagccttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattcaaact-aggatcttggttaaact 437  Q
    |||| ||||| |||||||||||||| ||  || |||||| ||||||||||||||  ||||||||||| ||| ||||| |||| |||| |||| |||| ||    
T  15683045 gagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctg-ctgcatgcccaaggctggattcgaactcaggaccttgattaagct 15682947  T
Q  438 ataagagac 446  Q
    | |||||||    
T  15682946 agaagagac 15682938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 446
Target Start/End: Original strand, 36994525 - 36994632
Alignment:
Q  339 gagccttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattc-aaactaggatcttggttaaact 437  Q
    |||||||||| |||| ||||||||  |||||| ||| || ||||||||||||||  |||||| |||| ||| ||||| || | |||| ||||||||||||    
T  36994525 gagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctg-ctgcatgtccaaggctggattcgaacccaggaccttggttaaact 36994623  T
Q  438 ataagagac 446  Q
    | |||||||    
T  36994624 agaagagac 36994632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 48915241 - 48915317
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtacccaatgacaccaatggcatcaaaagccaatggcacccaagtgctaccc 158  Q
    ||||||||||||||| ||||||||| ||| | |||| ||||||||||| |||||||||||| ||||||||||||||||    
T  48915241 ttgttaagagagagatagacacaaaagtatc-aatggcaccaatggcaccaaaagccaatgacacccaagtgctaccc 48915317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 27907728 - 27907651
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtacccaatgacaccaatggcatcaaaagccaatggcacccaagtgctacccc 159  Q
    ||||||||||||||| |||||||||| |||| | |||||||||||||| |||||  | |||||| ||||||||||||||    
T  27907728 ttgttaagagagagatagacacaaagttaccta-tgacaccaatggcaccaaaaaactatggcatccaagtgctacccc 27907651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 27032365 - 27032443
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtacccaatgacaccaatggcatc-aaaagccaatggcacccaagtgctacccc 159  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||| || | ||||  | |||||||||||||||||||||    
T  27032365 ttgttaagagagagatagacacaaagttaccc-atgacaccaatgacaccaaaaaaactatggcacccaagtgctacccc 27032443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 49177389 - 49177352
Alignment:
Q  122 aatggcatcaaaagccaatggcacccaagtgctacccc 159  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  49177389 aatggcaccaaaagccaatggcacctaagtgctacccc 49177352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 5398119 - 5398155
Alignment:
Q  122 aatggcatcaaaagccaatggcacccaagtgctaccc 158  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  5398119 aatggcaccaaaagccaatgacacccaagtgctaccc 5398155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 19238832 - 19238876
Alignment:
Q  347 tgagacctaaatgggcgacaaactatccctatgagttttaacgct 391  Q
    |||||||||||||| ||||||||| ||||||  ||||||||||||    
T  19238832 tgagacctaaatggacgacaaactctccctaaaagttttaacgct 19238876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 446
Target Start/End: Complemental strand, 38766205 - 38766098
Alignment:
Q  339 gagccttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattcaaa-ctaggatcttggttaaact 437  Q
    |||| |||||||||| ||||||||| || ||| |||||| ||||||||||||||  ||||||||||| ||| |||||||| | |||| ||||||||| ||    
T  38766205 gagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctg-ctgcatgcccaaggctggattcaaacccaggaccttggttaagct 38766107  T
Q  438 ataagagac 446  Q
    | |||||||    
T  38766106 agaagagac 38766098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 475
Target Start/End: Complemental strand, 45994638 - 45994502
Alignment:
Q  339 gagccttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattc-aaactaggatcttggttaaact 437  Q
    |||| |||||||||| ||||||||| ||  || |||||| ||||||||||| || |||||||||||| ||| ||||| || | |||| ||||||||| ||    
T  45994638 gagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttg-ttgcatgcccaaggctggattcgaatccaggaccttggttaagct 45994540  T
Q  438 ataagagaccagcgttatctcatataaacgctcttggg 475  Q
    | |||||||| |    ||||||| ||||||||||||||    
T  45994539 agaagagacctgttccatctcatctaaacgctcttggg 45994502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 446
Target Start/End: Original strand, 38844209 - 38844300
Alignment:
Q  355 aaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattcaaact-aggatcttggttaaactataagagac 446  Q
    ||||||||| || ||| | |||| |||||||||||||| |||||||||||| ||| ||||| |||| | || ||||||||| ||| |||||||    
T  38844209 aaatgggcggcagactcttcctaagagttttaacgctg-ttgcatgcccaaagctggattcgaactcatgaccttggttaagctagaagagac 38844300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 23185968 - 23186044
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtacccaatgacaccaatggcatcaaaagccaatggcacccaagtgctaccc 158  Q
    ||||||||||||||| |||||||||| |||| | || ||||||||||| |||||  | ||||||||||||||||||||    
T  23185968 ttgttaagagagagatagacacaaagttaccta-tggcaccaatggcaccaaaaaactatggcacccaagtgctaccc 23186044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 16876782 - 16876854
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtacccaatgacaccaatggcatcaaaagccaatggcacccaagtgct 154  Q
    ||||||||||||||| |||||||||| || || ||| ||||||||||| |||||  | ||||||||||||||||    
T  16876782 ttgttaagagagagatagacacaaagtta-cctatggcaccaatggcaccaaaaaactatggcacccaagtgct 16876854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 420
Target Start/End: Original strand, 30614715 - 30614787
Alignment:
Q  347 tgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattcaaact 420  Q
    ||||||||||||| |||||||||| || ||| ||||||||||||||  |||||||||||  ||| |||||||||    
T  30614715 tgagacctaaatgagcgacaaactctctctaagagttttaacgctg-atgcatgcccaaaactaaattcaaact 30614787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 32279358 - 32279434
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtacccaatgacaccaatggcatcaaaagccaatggcacccaagtgctaccc 158  Q
    ||||||||||||||| |||||||||| || |||||||||| |||  || |||||| |||||||||| || ||||||||    
T  32279358 ttgttaagagagagatagacacaaagata-ccaatgacactaattacaccaaaagtcaatggcacctaaatgctaccc 32279434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 475
Target Start/End: Original strand, 19477279 - 19477410
Alignment:
Q  344 ttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattcaaa-ctaggatcttggttaaactataag 442  Q
    ||||| |||| |||||| || ||| || |||||| |||||||||| ||||| |||||||||| ||| |||||||| | || | ||||||||| ||| |||    
T  19477279 ttgtgggacccaaatggccggcaagctctccctaagagttttaacactgtt-gcatgcccaaggctggattcaaacccagaaccttggttaagctagaag 19477377  T
Q  443 agaccagcgttatctcatataaacgctcttggg 475  Q
    ||||| |    ||||||| ||||||||||||||    
T  19477378 agacccgttccatctcatctaaacgctcttggg 19477410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 9488866 - 9488900
Alignment:
Q  121 caatggcatcaaaagccaatggcacccaagtgcta 155  Q
    |||||||| ||||||||||||||||||||||||||    
T  9488866 caatggcaccaaaagccaatggcacccaagtgcta 9488900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 18867993 - 18868068
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtacccaatgacaccaatggcatcaaaagccaatggcacccaagtgctaccc 158  Q
    ||||||||||||||| |||||||||| ||||  ||| ||||||||||| ||||   | ||| ||||||||||||||||    
T  18867993 ttgttaagagagagatagacacaaagttacc--atggcaccaatggcaccaaagaactatgacacccaagtgctaccc 18868068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 447
Target Start/End: Original strand, 13254126 - 13254234
Alignment:
Q  339 gagccttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattcaaact-aggatcttggttaaact 437  Q
    |||| ||||| |||||||||||||| ||  || |||||| |||||| |||||||  |||||||| || ||| ||||| |||| |||| ||||||||| ||    
T  13254126 gagcattgtgggacctaaatgggcggcaggctctccctaagagtttcaacgctg-ctgcatgcctaaggctggattcgaactcaggaccttggttaagct 13254224  T
Q  438 ataagagacc 447  Q
    | ||||||||    
T  13254225 agaagagacc 13254234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 447
Target Start/End: Complemental strand, 31492219 - 31492111
Alignment:
Q  339 gagccttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattc-aaactaggatcttggttaaact 437  Q
    |||| ||||| |||||||||||||| ||  || |||||| |||||||||| |||  ||||||||||| ||| ||||| || | |||| ||||||||| ||    
T  31492219 gagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactg-ctgcatgcccaaggctggattcgaacccaggaccttggttaagct 31492121  T
Q  438 ataagagacc 447  Q
    | ||||||||    
T  31492120 agaagagacc 31492111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 475
Target Start/End: Complemental strand, 46373789 - 46373653
Alignment:
Q  339 gagccttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattc-aaactaggatcttggttaaact 437  Q
    |||| ||||| |||| |||| |||| ||| || |||||| ||||||||||| || ||| ||||||||  || ||||| || | ||||||||| |||| ||    
T  46373789 gagcattgtgtgacccaaataggcggcaagctctccctacgagttttaacgatg-ttgtatgcccaagactggattcgaacccaggatcttgcttaagct 46373691  T
Q  438 ataagagaccagcgttatctcatataaacgctcttggg 475  Q
    | |||||||| |||| ||||||| |||  |||||||||    
T  46373690 agaagagacccgcgtcatctcatctaagagctcttggg 46373653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 7265426 - 7265474
Alignment:
Q  427 ttggttaaactataagagaccagcgttatctcatataaacgctcttggg 475  Q
    |||||||| ||| |||||||| | || ||||||||||||||||||||||    
T  7265426 ttggttaagctagaagagacccgtgtcatctcatataaacgctcttggg 7265474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 475
Target Start/End: Original strand, 8839339 - 8839442
Alignment:
Q  372 tccctatgagttttaacgctgtttgcatgcccaatgctagattc-aaactaggatcttggttaaactataagagaccagcgttatctcatataaacgctc 470  Q
    |||||| ||||||||||||||  ||||||||||| ||| ||||| || | |||| ||||||||| ||| |||||||| |  | ||||||| ||| |||||    
T  8839339 tccctaagagttttaacgctg-ctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaagcgctc 8839437  T
Q  471 ttggg 475  Q
    |||||    
T  8839438 ttggg 8839442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 28828787 - 28828843
Alignment:
Q  336 attgagccttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctg 392  Q
    |||||||||||||||||| |||||| ||| ||||| || ||  ||||||||||||||    
T  28828787 attgagccttgtgagacccaaatggacgataaactctctctgagagttttaacgctg 28828843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 475
Target Start/End: Complemental strand, 21910316 - 21910185
Alignment:
Q  344 ttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattc-aaactaggatcttggttaaactataag 442  Q
    ||||| |||||||||| ||| || ||| || ||| ||||||||||| || |||||||||||| ||| ||||| || | |||||||||||||| ||| |||    
T  21910316 ttgtgggacctaaatgagcggcagactctctctaagagttttaacgatg-ttgcatgcccaaggctggattcgaacccaggatcttggttaagctagaag 21910218  T
Q  443 agaccagcgttatctcatataaacgctcttggg 475  Q
    ||||  |  | ||||||| ||||||||||||||    
T  21910217 agacttgtttcatctcatctaaacgctcttggg 21910185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 473
Target Start/End: Complemental strand, 278502 - 278374
Alignment:
Q  344 ttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattcaaact-aggatcttggttaaactataag 442  Q
    ||||| ||||||||||| || |||||| ||| || ||||||||| | || |||||||||||| ||| |||||||||| | || ||| ||||| ||| |||    
T  278502 ttgtgggacctaaatggacggcaaactctccataagagttttaatg-tg-ttgcatgcccaaagctggattcaaactcaagaccttagttaagctagaag 278405  T
Q  443 agaccagcgttatctcatataaacgctcttg 473  Q
    ||||  | || ||||||| ||||||||||||    
T  278404 agactcgtgtcatctcatctaaacgctcttg 278374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 447
Target Start/End: Complemental strand, 12411259 - 12411156
Alignment:
Q  344 ttgtgagacctaaatgggcgacaaactatccctatgagttttaacgctgtttgcatgcccaatgctagattcaaact-aggatcttggttaaactataag 442  Q
    ||||| ||| |||||||||| || ||| | |||| ||||||||||||||  ||||||||||| ||| ||||| |||| |||| |||||||||  || |||    
T  12411259 ttgtgggacttaaatgggcggcagactcttcctaagagttttaacgctg-ctgcatgcccaaggctggattcgaactcaggaccttggttaagttagaag 12411161  T
Q  443 agacc 447  Q
    |||||    
T  12411160 agacc 12411156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 4037166 - 4037092
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtacccaatgacaccaatggcatcaaaagccaatggcacccaagtgctac 156  Q
    ||||||||||||||| |||||||||| |||| | || ||||||||||| |||||  | ||||||||||||||||||    
T  4037166 ttgttaagagagagatagacacaaagttaccta-tggcaccaatggcaccaaaaaactatggcacccaagtgctac 4037092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 49279514 - 49279438
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtacccaatgacaccaatggcatcaaaagccaatggcacccaagtgctaccc 158  Q
    ||||||||||||||| |||||||||| || || |||||||||||| || |||||  | |||||| |||||||||||||    
T  49279514 ttgttaagagagagatagacacaaagtta-cctatgacaccaatgacaccaaaaaactatggcatccaagtgctaccc 49279438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 37515628 - 37515702
Alignment:
Q  81 ttgttaagagagagacagacacaaaggtacccaatgacaccaatggcatcaaaagccaatggcacccaagtgctac 156  Q
    ||||||||||||||| |||||||||| || || |||| |||||||| |||||||  | ||| ||||||||||||||    
T  37515628 ttgttaagagagagatagacacaaagtta-cctatgataccaatggtatcaaaaaactatgacacccaagtgctac 37515702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 36213012 - 36212963
Alignment:
Q  339 gagccttgtgagacctaaatgggcgacaaactatccctatgagttttaac 388  Q
    |||| ||||| |||||||||||||| |||||| |||||| ||||||||||    
T  36213012 gagcattgtgggacctaaatgggcggcaaactctccctaagagttttaac 36212963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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