View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868-Insertion-17 (Length: 367)
Name: NF4868-Insertion-17
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868-Insertion-17 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 42158753 - 42158450
Alignment:
| Q |
9 |
tctactcgttaagttacttgaagatcttcaccatacatttcgttttcgtggaccttggcttgattctcttgagattctcatgttcgagaatgctacaaac |
108 |
Q |
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| T |
42158753 |
tctactcgttaagttacttgaagatcttcaccatacatttcgttttcgtggaccttggcttgattctcttaagattctcatgttcgagaatgctacaaac |
42158654 |
T |
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| Q |
109 |
gattctcgcaccttgaaaaaactgaggggacttgagaaagag-tttaagggctgtaatgatgaaatcatgcgtaaatggccgagaaagagtaaagg---- |
203 |
Q |
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|||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42158653 |
gattcttgcaccttgaaaaaactgaggggacttgagaaaaagttttaagggctgtaatgatgaaatcatgcgtaaatggccgagaaagagtaaagggact |
42158554 |
T |
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| Q |
204 |
-----gactgggttgatgcaatcctttaggaaattggtcaaatatcatcttaagtatgttacggaagataggaaagctgtttccgatgccagaaagtctt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42158553 |
gggttgactgggttgatgcaatcctttaggaaattggtcaaatatcatcttaaggttgttaccgaagataggaaagctgtttccgatgccagaaagtctt |
42158454 |
T |
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| Q |
299 |
tgaa |
302 |
Q |
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|||| |
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| T |
42158453 |
tgaa |
42158450 |
T |
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