View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868-Insertion-20 (Length: 332)
Name: NF4868-Insertion-20
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868-Insertion-20 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 332
Target Start/End: Complemental strand, 20636764 - 20636451
Alignment:
| Q |
22 |
tgaatatgcttttgagaagctttacatggtcaacatgggtaatcatgacccagatagtaaaaatgcatttgggtcatggttagatgatatcaactacata |
121 |
Q |
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| T |
20636764 |
tgaatatgcttttgagaagttttacatggtcaacatgggtgataattacctagagaataaaaatgcatttgggtcatggttagatgatatcaactacata |
20636665 |
T |
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| Q |
122 |
tctggttcacaagatggaactgttcttgactggaaggatgctag---taagatgaatcaacgttttctcgattcaaatgactataactattcagcacctg |
218 |
Q |
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| T |
20636664 |
tttggttcacaagatggaactgttcttgtcatgaaggatgctagagttaatatgaatcgaatttttctcgattcgaatgactataactattcagcacctg |
20636565 |
T |
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| Q |
219 |
aagaattatattggtctgcaagaacaatgagtagtagcaatggtgattccaacataaggtacaatttaacttggtcatttcttgttgattctggatttaa |
318 |
Q |
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| T |
20636564 |
aagaattatattggtctgcaagaacaatgagtagtagcaatggtgattccaacataaggtacaatttaacatggtcatttcgtgttgattctggattcaa |
20636465 |
T |
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| Q |
319 |
gtatcttgttaggc |
332 |
Q |
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| T |
20636464 |
gtatcttgttaggc |
20636451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 20652890 - 20652564
Alignment:
| Q |
9 |
ttattatcaacgctgaatatgcttttgagaagctttacatggtcaacatgggtaatcatgacccagatagtaaaaatgcatttgggtcatggttagatga |
108 |
Q |
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| T |
20652890 |
ttattatcagccatgaatatgcttttgagaagttttacatggtcaacatgggtcataattacatagagaataaaaatgcatttgggtcatggttagatga |
20652791 |
T |
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| Q |
109 |
tatcaactacatatctggttcacaagatggaactgttcttgactggaaggatgctag---taagatgaatcaacgttttctcgattcaaatgactataac |
205 |
Q |
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| T |
20652790 |
tatcaactacatatctggttcacaagatggaactgttcttgtcatgaaggatgctagagttaatatgaatcgaagttttctcgattcgaatgactataac |
20652691 |
T |
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| Q |
206 |
tattcagcacctgaagaattatattggtctgcaagaacaatgagtagtagcaatggtgattccaacataaggtacaatttaacttggtcatttcttgttg |
305 |
Q |
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| T |
20652690 |
tattcagcacctgaagaattatattggtcagcaagaacaatgagtagtagcaatggtgattccaatataaggtacaatttaacatggtcatttcgtgttg |
20652591 |
T |
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| Q |
306 |
attctggatttaagtatcttgttaggc |
332 |
Q |
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| T |
20652590 |
attctggattcaagtatcttgttaggc |
20652564 |
T |
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