View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4868-Insertion-3 (Length: 1118)

Name: NF4868-Insertion-3
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4868-Insertion-3
NF4868-Insertion-3
[»] chr2 (31 HSPs)
chr2 (372-700)||(36041271-36041595)
chr2 (11-203)||(36041589-36041781)
chr2 (743-849)||(36041126-36041231)
chr2 (307-354)||(3330193-3330240)
chr2 (208-255)||(16403522-16403569)
chr2 (204-255)||(34107488-34107539)
chr2 (307-354)||(42678316-42678363)
chr2 (205-255)||(31149152-31149202)
chr2 (202-254)||(25553197-25553249)
chr2 (204-255)||(11069396-11069447)
chr2 (449-504)||(35933116-35933171)
chr2 (205-255)||(33482693-33482743)
chr2 (201-239)||(43684269-43684307)
chr2 (215-256)||(6866512-6866553)
chr2 (208-257)||(27463575-27463624)
chr2 (311-352)||(34107554-34107595)
chr2 (307-352)||(37592216-37592261)
chr2 (204-297)||(3330208-3330303)
chr2 (307-359)||(31149089-31149141)
chr2 (307-350)||(29090471-29090514)
chr2 (307-358)||(33613593-33613644)
chr2 (307-354)||(37886217-37886264)
chr2 (204-239)||(41541582-41541617)
chr2 (205-252)||(43027149-43027196)
chr2 (311-349)||(6866568-6866606)
chr2 (306-352)||(41750002-41750047)
chr2 (308-349)||(5901828-5901869)
chr2 (315-352)||(6270495-6270532)
chr2 (307-352)||(18424146-18424191)
chr2 (307-352)||(20435837-20435882)
chr2 (110-195)||(35984634-35984719)
[»] chr4 (39 HSPs)
chr4 (204-297)||(51974740-51974835)
chr4 (204-301)||(8716393-8716492)
chr4 (203-255)||(23448965-23449017)
chr4 (205-255)||(40407012-40407062)
chr4 (307-352)||(26885394-26885439)
chr4 (207-255)||(16556447-16556495)
chr4 (203-254)||(46283114-46283165)
chr4 (307-352)||(11491213-11491258)
chr4 (207-297)||(36993037-36993129)
chr4 (307-352)||(40406954-40406999)
chr4 (307-352)||(46283178-46283223)
chr4 (207-255)||(39387474-39387522)
chr4 (204-255)||(13210215-13210266)
chr4 (204-255)||(27862882-27862933)
chr4 (200-255)||(35909080-35909135)
chr4 (203-254)||(41971351-41971402)
chr4 (306-352)||(36993096-36993142)
chr4 (307-349)||(43362165-43362207)
chr4 (307-349)||(45847923-45847965)
chr4 (307-352)||(16556507-16556552)
chr4 (204-253)||(49635425-49635474)
chr4 (215-255)||(8716558-8716598)
chr4 (203-255)||(50815699-50815751)
chr4 (204-255)||(2832122-2832173)
chr4 (307-354)||(25234850-25234897)
chr4 (204-239)||(37574266-37574301)
chr4 (208-255)||(45847977-45848024)
chr4 (220-255)||(52366216-52366251)
chr4 (221-255)||(22096442-22096476)
chr4 (202-248)||(43362226-43362272)
chr4 (307-349)||(48404134-48404176)
chr4 (307-352)||(29430553-29430598)
chr4 (307-352)||(38690722-38690767)
chr4 (209-254)||(42154564-42154609)
chr4 (307-352)||(45355712-45355756)
chr4 (307-352)||(45369453-45369497)
chr4 (315-352)||(49607940-49607977)
chr4 (307-352)||(50815763-50815808)
chr4 (307-352)||(51974803-51974848)
[»] chr6 (23 HSPs)
chr6 (202-255)||(18903418-18903471)
chr6 (204-255)||(6228311-6228362)
chr6 (204-255)||(15717064-15717115)
chr6 (203-255)||(29322027-29322079)
chr6 (210-298)||(24794901-24794991)
chr6 (208-255)||(25045737-25045784)
chr6 (307-352)||(6228254-6228299)
chr6 (307-352)||(18903361-18903406)
chr6 (307-352)||(20415556-20415601)
chr6 (215-255)||(19748103-19748143)
chr6 (307-354)||(4854298-4854345)
chr6 (205-297)||(20415569-20415663)
chr6 (206-297)||(17216953-17217046)
chr6 (205-255)||(28536219-28536269)
chr6 (313-358)||(3974503-3974548)
chr6 (307-352)||(17217014-17217059)
chr6 (307-352)||(29321970-29322015)
chr6 (205-253)||(21874274-21874322)
chr6 (204-255)||(4854357-4854408)
chr6 (204-250)||(18618595-18618641)
chr6 (307-352)||(5641684-5641729)
chr6 (207-259)||(11611354-11611407)
chr6 (307-352)||(11611425-11611470)
[»] chr5 (22 HSPs)
chr5 (198-255)||(38503308-38503365)
chr5 (205-255)||(31250141-31250191)
chr5 (207-255)||(42208913-42208961)
chr5 (202-257)||(461997-462052)
chr5 (204-255)||(12375463-12375514)
chr5 (205-255)||(43227860-43227910)
chr5 (307-352)||(31250203-31250248)
chr5 (307-352)||(38503251-38503296)
chr5 (307-352)||(43227922-43227967)
chr5 (210-293)||(17077360-17077445)
chr5 (218-255)||(42643854-42643891)
chr5 (204-255)||(930989-931040)
chr5 (307-354)||(15680893-15680940)
chr5 (311-354)||(34729531-34729574)
chr5 (201-247)||(13576313-13576359)
chr5 (204-253)||(87784-87833)
chr5 (307-352)||(1572166-1572211)
chr5 (307-352)||(4395845-4395890)
chr5 (307-352)||(15470615-15470660)
chr5 (204-253)||(15470674-15470723)
chr5 (307-352)||(17077417-17077462)
chr5 (307-352)||(42208972-42209017)
[»] chr3 (39 HSPs)
chr3 (198-255)||(2259144-2259201)
chr3 (205-255)||(25165434-25165484)
chr3 (205-255)||(29226320-29226370)
chr3 (197-255)||(39739260-39739318)
chr3 (206-297)||(47864631-47864724)
chr3 (204-253)||(30162650-30162699)
chr3 (202-255)||(46247251-46247304)
chr3 (204-255)||(11483606-11483657)
chr3 (204-255)||(33528256-33528307)
chr3 (208-255)||(34225192-34225239)
chr3 (201-255)||(46798572-46798626)
chr3 (307-352)||(29645821-29645866)
chr3 (307-352)||(47864692-47864737)
chr3 (204-253)||(55426107-55426156)
chr3 (199-255)||(42913446-42913502)
chr3 (196-255)||(1084079-1084138)
chr3 (204-255)||(36590383-36590434)
chr3 (307-354)||(46798638-46798685)
chr3 (204-255)||(50381707-50381758)
chr3 (306-352)||(27394562-27394608)
chr3 (307-352)||(11483669-11483714)
chr3 (307-352)||(27471560-27471605)
chr3 (202-255)||(27817118-27817171)
chr3 (307-352)||(29226382-29226427)
chr3 (307-352)||(33528199-33528244)
chr3 (307-352)||(39739330-39739375)
chr3 (307-352)||(49429516-49429561)
chr3 (311-352)||(50381774-50381815)
chr3 (205-257)||(7517934-7517986)
chr3 (440-504)||(9638115-9638179)
chr3 (203-255)||(32421340-32421392)
chr3 (204-251)||(7239799-7239846)
chr3 (204-255)||(8258145-8258196)
chr3 (307-354)||(50676859-50676906)
chr3 (306-352)||(985913-985959)
chr3 (307-352)||(7239858-7239903)
chr3 (307-352)||(31435495-31435540)
chr3 (315-352)||(38668192-38668229)
chr3 (307-348)||(45431683-45431724)
[»] chr7 (33 HSPs)
chr7 (203-255)||(48433761-48433813)
chr7 (204-255)||(40273814-40273865)
chr7 (197-255)||(12166068-12166126)
chr7 (204-253)||(23824644-23824693)
chr7 (207-293)||(27454007-27454095)
chr7 (307-352)||(31793524-31793569)
chr7 (204-255)||(1575687-1575738)
chr7 (204-255)||(26456056-26456107)
chr7 (208-255)||(42554631-42554678)
chr7 (205-255)||(42338298-42338348)
chr7 (203-297)||(31793460-31793556)
chr7 (307-352)||(40273877-40273922)
chr7 (308-352)||(48433704-48433748)
chr7 (307-354)||(3889792-3889839)
chr7 (204-255)||(3902324-3902375)
chr7 (307-358)||(12166138-12166189)
chr7 (204-254)||(33248854-33248904)
chr7 (204-250)||(36528275-36528321)
chr7 (306-352)||(38378274-38378320)
chr7 (307-352)||(4956086-4956131)
chr7 (205-254)||(43440683-43440732)
chr7 (204-252)||(46266661-46266709)
chr7 (204-239)||(14707286-14707321)
chr7 (204-251)||(24029978-24030025)
chr7 (204-255)||(34322075-34322126)
chr7 (204-255)||(38378212-38378263)
chr7 (310-352)||(20529955-20529997)
chr7 (307-349)||(33248799-33248841)
chr7 (204-246)||(44986587-44986629)
chr7 (311-352)||(23824586-23824627)
chr7 (307-352)||(24030041-24030086)
chr7 (307-352)||(42841775-42841820)
chr7 (315-352)||(43440753-43440790)
[»] chr1 (48 HSPs)
chr1 (203-255)||(34702364-34702416)
chr1 (203-255)||(49619964-49620016)
chr1 (204-251)||(35527390-35527437)
chr1 (204-255)||(50011500-50011551)
chr1 (205-255)||(24134675-24134725)
chr1 (207-255)||(47651868-47651916)
chr1 (204-255)||(27054683-27054734)
chr1 (204-255)||(39304254-39304305)
chr1 (204-253)||(2017737-2017786)
chr1 (204-298)||(15417823-15417919)
chr1 (307-352)||(24134618-24134663)
chr1 (307-352)||(40061499-40061544)
chr1 (199-255)||(43109289-43109345)
chr1 (207-255)||(48497264-48497312)
chr1 (312-364)||(52164353-52164405)
chr1 (204-255)||(12973329-12973380)
chr1 (204-251)||(15550879-15550926)
chr1 (204-255)||(22386287-22386338)
chr1 (204-255)||(50065003-50065054)
chr1 (204-254)||(4126892-4126942)
chr1 (306-352)||(29332339-29332385)
chr1 (204-242)||(35309718-35309756)
chr1 (307-352)||(3347697-3347742)
chr1 (307-352)||(14262715-14262760)
chr1 (307-352)||(19424102-19424147)
chr1 (307-352)||(49239841-49239886)
chr1 (209-254)||(50302903-50302948)
chr1 (207-251)||(7438617-7438661)
chr1 (312-352)||(25031491-25031531)
chr1 (204-240)||(35527567-35527603)
chr1 (204-255)||(8893853-8893904)
chr1 (306-349)||(10790490-10790533)
chr1 (308-351)||(12148568-12148611)
chr1 (312-351)||(35308470-35308509)
chr1 (203-250)||(40061435-40061482)
chr1 (309-352)||(49620030-49620073)
chr1 (307-358)||(50011563-50011614)
chr1 (313-352)||(50065072-50065111)
chr1 (316-354)||(20267883-20267921)
chr1 (205-255)||(25585357-25585407)
chr1 (308-354)||(25800325-25800371)
chr1 (307-349)||(35309780-35309822)
chr1 (306-352)||(42946461-42946507)
chr1 (207-253)||(47428948-47428994)
chr1 (307-352)||(10123047-10123092)
chr1 (307-352)||(16985929-16985974)
chr1 (210-255)||(30735827-30735872)
chr1 (307-352)||(43109232-43109277)
[»] chr8 (35 HSPs)
chr8 (204-255)||(13906677-13906728)
chr8 (204-255)||(41454878-41454929)
chr8 (205-255)||(1032564-1032614)
chr8 (884-950)||(33177149-33177215)
chr8 (204-255)||(10161957-10162008)
chr8 (204-255)||(30466672-30466723)
chr8 (208-255)||(41845480-41845527)
chr8 (204-255)||(44828484-44828535)
chr8 (207-255)||(29114098-29114146)
chr8 (306-354)||(38064032-38064080)
chr8 (215-255)||(38289286-38289326)
chr8 (204-255)||(4259852-4259903)
chr8 (320-354)||(38544917-38544951)
chr8 (216-254)||(39104612-39104650)
chr8 (307-352)||(1032626-1032671)
chr8 (204-294)||(8350429-8350521)
chr8 (307-352)||(19957315-19957360)
chr8 (307-352)||(39104663-39104707)
chr8 (307-352)||(41454821-41454866)
chr8 (308-352)||(4259916-4259960)
chr8 (203-255)||(19733120-19733172)
chr8 (207-255)||(34037999-34038047)
chr8 (203-251)||(36587705-36587753)
chr8 (307-358)||(5904362-5904413)
chr8 (204-255)||(23139067-23139118)
chr8 (215-254)||(33820447-33820486)
chr8 (204-255)||(38063970-38064021)
chr8 (209-255)||(36103973-36104019)
chr8 (308-350)||(36587646-36587688)
chr8 (215-253)||(38544977-38545015)
chr8 (218-255)||(280047-280084)
chr8 (218-255)||(635768-635805)
chr8 (218-255)||(821571-821608)
chr8 (313-354)||(8145835-8145876)
chr8 (215-248)||(43456710-43456743)
[»] scaffold0018 (1 HSPs)
scaffold0018 (204-255)||(121850-121901)
[»] scaffold0001 (2 HSPs)
scaffold0001 (204-255)||(419705-419756)
scaffold0001 (307-352)||(419768-419813)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-160; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 372 - 700
Target Start/End: Complemental strand, 36041595 - 36041271
Alignment:
Q  372 aaaattaaatgtttgtgaaaaataacttactttcgtcagttacgaccatagttaggaaaagcaagtgcaagataatcaaagcataaatgatttttagaat 471  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36041595 aaaattaaatgtttgtgaaaaattacttactttcgccagttacgaccatagttaggaaaagcaagtgcaagataatcaaagcataaatgatttttagaat 36041496  T
Q  472 ttcagccatattttgtctccttaacttgcatgttgctgacaaatcgttatttgatcactttataataagtaaaaacgctgcatgctttgttaattttaat 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||||||||||||||||    
T  36041495 ttcagccatattttgtctccttaacttgcatgttgctgacaaatcgttatttgatcacttt---ataagt-aaaacgctgcatgctttgttaattttaat 36041400  T
Q  572 taaattgtttttagcatttacggcaagaaactatttatataatcaacattattattaaacgtctcttgggtgtgtcacatttctctctaaaactcactta 671  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36041399 taaattgtttttaacacttacggcaagaaaccatttatataatcaacattattattaaacgtctcttgggtgtgtcacatttctctctaaaactcactta 36041300  T
Q  672 aaaatcttgatgatgaccaaaggtcacta 700  Q
    |||||||||||||||||||||||||||||    
T  36041299 aaaatcttgatgatgaccaaaggtcacta 36041271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 36041781 - 36041589
Alignment:
Q  11 tttacacttaattaaaatacatacaatgacaaaaatccataaaacgccaaggctctccggtaagaagacatttataagttgtacaatgctcgttaatttt 110  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36041781 tttacacttaattaaaatacatacaaagacaaaaatccataaaacaccaaggctgtccggtaagaagacatttataagttgtacaatgctcgttaatttt 36041682  T
Q  111 gcaggggagaaaacctgcatgtcaaataagaataaatgaatgtcacaagaagggaatgcaatgttttatacataattaagaagaagaaaatta 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36041681 gcaggggtgaaaacctgcatgtcaaataagaataaatgaatgtcacaagaagggaatgcaatgttttatacatgattaagaagaagaaaatta 36041589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 743 - 849
Target Start/End: Complemental strand, 36041231 - 36041126
Alignment:
Q  743 gcctttcttggtagacatggaaaaatctcaacaaaaataataatatgaagtgattgaaaaaattatagaaataatggttgaagaggtgacaacaagtgtg 842  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |    
T  36041231 gcctttcttggtagacatggaaaaatctcaacaaaa-taataatatgaagtgattgaaaaaattatagaaataatggttgaggaggtgacaacgagtgcg 36041133  T
Q  843 ataaaag 849  Q
    |||||||    
T  36041132 ataaaag 36041126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 3330240 - 3330193
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaac 354  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  3330240 gaaccccggacaccccacttattcatctttaaggtgaatttctctaac 3330193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 16403522 - 16403569
Alignment:
Q  208 ccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  16403522 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 16403569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 34107488 - 34107539
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  34107488 gtccctatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 34107539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 42678363 - 42678316
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaac 354  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  42678363 gaaccccggacaccccacttattcatctttaaggtgaatttctctaac 42678316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 31149202 - 31149152
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||| | ||||||||||||||||||||||| |||||||||||||||    
T  31149202 tccccatgagcatagctcatttggtaagggataatgcacaatatgtgcagg 31149152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 25553249 - 25553197
Alignment:
Q  202 tagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcag 254  Q
    |||||||||||| ||||  ||||||||||||||||||| ||||||||||||||    
T  25553249 tagtccccatgagcttaattcatttggtaagggataatgcacaatatgtgcag 25553197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 11069447 - 11069396
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||| ||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  11069447 gtccgcatgagcttagctcatttggtaaggaataatgcacaatatgtgcagg 11069396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 449 - 504
Target Start/End: Original strand, 35933116 - 35933171
Alignment:
Q  449 aaagcataaatgatttttagaatttcagccatattttgtctccttaacttgcatgt 504  Q
    ||||||||||  |||||| ||||||||||||||||||||||| |||| ||||||||    
T  35933116 aaagcataaacaattttttgaatttcagccatattttgtctctttaatttgcatgt 35933171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 33482743 - 33482693
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||||||||||||||||||||| || || |||||||| ||||||    
T  33482743 tccccatgaacttagctcatttggtaaggaatgatgcacaatatatgcagg 33482693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 43684269 - 43684307
Alignment:
Q  201 ttagtccccatgaacttagctcatttggtaagggataat 239  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  43684269 ttagtccccatgagcttagctcatttggtaagggataat 43684307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 6866512 - 6866553
Alignment:
Q  215 cttagctcatttggtaagggataatacacaatatgtgcagga 256  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  6866512 cttaactcatttggtaagggataatgcacaatatgtgcagga 6866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 27463624 - 27463575
Alignment:
Q  208 ccatgaacttagctcatttggtaagggataatacacaatatgtgcaggag 257  Q
    |||||| ||||||||||||||||||| ||||| |||||||| ||||||||    
T  27463624 ccatgagcttagctcatttggtaaggaataatgcacaatatatgcaggag 27463575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 34107554 - 34107595
Alignment:
Q  311 cccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  34107554 cccggacaccccacttattcatctttaaggtgaatttctcta 34107595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 37592261 - 37592216
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||||    
T  37592261 gaaccccagacaccccacttatttacctttaaggtgaatttctcta 37592216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 297
Target Start/End: Complemental strand, 3330303 - 3330208
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcaggagt--taatatgaacctcggacaccccacttatttatctttaag 297  Q
    |||||||||  |||| ||||||| |||||||||||| ||||||||||||||  ||   | |  ||||| ||||||||||||||||| |||||||||    
T  3330303 gtccccatgtgcttaactcatttagtaagggataatgcacaatatgtgcagaggtcggagttcgaaccccggacaccccacttattcatctttaag 3330208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 31149141 - 31149089
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaactactt 359  Q
    ||||||| |||||||||||| || |||||||||||| ||||||||||| ||||    
T  31149141 gaaccccagacaccccactttttaatctttaaggtgaatttctctaaccactt 31149089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 29090471 - 29090514
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctc 350  Q
    |||||||||||||| |||||||| |||||||||||| |||||||    
T  29090471 gaaccccggacacctcacttattcatctttaaggtgaatttctc 29090514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 33613644 - 33613593
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaactact 358  Q
    ||||||||||||||||||||||| | ||||||| || ||||||||| |||||    
T  33613644 gaaccccggacaccccacttattcacctttaagttgaatttctctagctact 33613593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 37886264 - 37886217
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaac 354  Q
    |||||| |||||||||||||||| | |||||||||| |||||||||||    
T  37886264 gaaccctggacaccccacttattcacctttaaggtgaatttctctaac 37886217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 41541617 - 41541582
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataat 239  Q
    |||||||||| |||||||||||||||||||||||||    
T  41541617 gtccccatgagcttagctcatttggtaagggataat 41541582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 43027149 - 43027196
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgc 252  Q
    ||||||||| ||||||||||||| ||||||||||| |||||| |||||    
T  43027149 tccccatgagcttagctcatttgataagggataatgcacaatttgtgc 43027196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 6866568 - 6866606
Alignment:
Q  311 cccggacaccccacttatttatctttaaggtggatttct 349  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  6866568 cccggacacctcacttatttatctttaaggtgaatttct 6866606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 41750002 - 41750047
Alignment:
Q  306 tgaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||||||||| ||||||| |||||||||||| |||||||||    
T  41750002 tgaaccccggacaccc-acttattcatctttaaggtgaatttctcta 41750047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 5901869 - 5901828
Alignment:
Q  308 aaccccggacaccccacttatttatctttaaggtggatttct 349  Q
    |||||||||||||||||||||| ||||| |||||| ||||||    
T  5901869 aaccccggacaccccacttattcatcttaaaggtgaatttct 5901828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 6270495 - 6270532
Alignment:
Q  315 gacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  6270495 gacacctcacttatttatctttaaggtgaatttctcta 6270532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 18424191 - 18424146
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||| ||||||| |||||||||| |||||||||||| |||||||||    
T  18424191 gaactccggacatcccacttattcatctttaaggtgaatttctcta 18424146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 20435837 - 20435882
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||| |||||| |||||||||| |||||||||||| |||||||||    
T  20435837 gaacctcggacatcccacttattcatctttaaggtgaatttctcta 20435882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 35984719 - 35984634
Alignment:
Q  110 tgcaggggagaaaacctgcatgtcaaataagaataaatgaatgtcacaagaagggaatgcaatgttttatacataattaagaagaa 195  Q
    |||| ||| ||||||||| || |||| ||||||||||||||||| || ||||||| ||  ||| ||||||| || ||||| |||||    
T  35984719 tgcaagggcgaaaacctgtatttcaattaagaataaatgaatgttactagaaggggataaaatattttatatatgattaataagaa 35984634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 8e-21; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 204 - 297
Target Start/End: Original strand, 51974740 - 51974835
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcaggagt--taatatgaacctcggacaccccacttatttatctttaag 297  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||    ||  |||||||||||| ||||||||||||||||||||    
T  51974740 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcgggattcgaacctcggacatcccacttatttatctttaag 51974835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 204 - 301
Target Start/End: Complemental strand, 8716492 - 8716393
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcaggagttaa--tatgaacctcggacaccccacttatttatctttaagagat 301  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||  |  |||||   |||||||||||||||||||||||| ||||    
T  8716492 gtccccatgaacttagctcatttgataagggataatgcacaatatgtgcagaagtcaaggttcgaaccctcgacaccccacttatttatctttaaaagat 8716393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 23448965 - 23449017
Alignment:
Q  203 agtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  23448965 agtccccatgaacttagcttatttggtaagggataatgcacaatatgtgcagg 23449017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 40407062 - 40407012
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  40407062 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 40407012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 26885439 - 26885394
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  26885439 gaaccccggacactccacttatttatctttaaggtggatttctcta 26885394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 16556447 - 16556495
Alignment:
Q  207 cccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  16556447 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 16556495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 46283114 - 46283165
Alignment:
Q  203 agtccccatgaacttagctcatttggtaagggataatacacaatatgtgcag 254  Q
    ||||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  46283114 agtccccatgagcttacctcatttggtaagggataatgcacaatatgtgcag 46283165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 11491258 - 11491213
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  11491258 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 11491213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 36993037 - 36993129
Alignment:
Q  207 cccatgaacttagctcatttggtaagggataatacacaatatgtgcaggagtt--aatatgaacctcggacaccccacttatttatctttaag 297  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||||| ||| |||    | |||||| ||||||||||| ||||| |||||||||    
T  36993037 cccatgagcttagctcatttgataagggataatgcacaatatgtgaaggggttggggtttgaaccccggacaccccaattattcatctttaag 36993129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 40406999 - 40406954
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  40406999 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 40406954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 46283178 - 46283223
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  46283178 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 46283223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 39387474 - 39387522
Alignment:
Q  207 cccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  39387474 cccatgaacttagctcatttggtaagggataatgcataatttgtgcagg 39387522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 13210266 - 13210215
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||| |||| ||||||||||||||| ||||||||| |||||||||||||||    
T  13210266 gtccctatgagcttagctcatttggtcagggataatgcacaatatgtgcagg 13210215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 27862933 - 27862882
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||| ||||||||||| |||||| ||||||||    
T  27862933 gtccccatgagcttagctcatttgataagggataatgcacaatttgtgcagg 27862882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 35909135 - 35909080
Alignment:
Q  200 attagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||| |||||| |||||||||||| |||||||||||| |||||||| ||||||    
T  35909135 attagtctccatgagcttagctcattttgtaagggataatgcacaatatatgcagg 35909080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 41971402 - 41971351
Alignment:
Q  203 agtccccatgaacttagctcatttggtaagggataatacacaatatgtgcag 254  Q
    ||||||||||| |||||||||||||||||| |||||| |||||| |||||||    
T  41971402 agtccccatgagcttagctcatttggtaagtgataatgcacaatttgtgcag 41971351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 36993096 - 36993142
Alignment:
Q  306 tgaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||    
T  36993096 tgaaccccggacaccccaattattcatctttaaggtgaatttctcta 36993142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 43362207 - 43362165
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttct 349  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  43362207 gaaccccggacaccccacttattcatctttaaggtgaatttct 43362165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 45847965 - 45847923
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttct 349  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  45847965 gaaccccggacaccccacttattcatctttaaggtgaatttct 45847923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 16556507 - 16556552
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||| |||||||||||||| |||||||||||| |||||||||    
T  16556507 gaaccccgaacaccccacttattcatctttaaggtgaatttctcta 16556552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 49635425 - 49635474
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgca 253  Q
    ||||||||||  |||||||||||||||||||||||| |||||||| ||||    
T  49635425 gtccccatgagtttagctcatttggtaagggataatgcacaatatatgca 49635474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 8716558 - 8716598
Alignment:
Q  215 cttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  8716558 cttatctcatttggtaagggataatgcacaatatgtgcagg 8716598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 50815699 - 50815751
Alignment:
Q  203 agtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||| ||||||||||||| ||| ||||||| |||||| ||||||||    
T  50815699 agtccccatgagcttagctcatttgataaaggataatgcacaatttgtgcagg 50815751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 2832173 - 2832122
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| |||||||||| ||||||||| | || |||||||||||||||    
T  2832173 gtccccatgagcttagctcatctggtaaggggtgatgcacaatatgtgcagg 2832122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 25234897 - 25234850
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaac 354  Q
    ||||||| ||||||||| ||||| |||||||||||| |||||||||||    
T  25234897 gaaccccagacaccccagttattcatctttaaggtgaatttctctaac 25234850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 37574266 - 37574301
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataat 239  Q
    |||||||||| |||||||||||||||||||||||||    
T  37574266 gtccccatgagcttagctcatttggtaagggataat 37574301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 45848024 - 45847977
Alignment:
Q  208 ccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||| |||||||| ||||||||||| || ||||||||||||    
T  45848024 ccatgaacttatctcatttgataagggataatgcataatatgtgcagg 45847977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 52366216 - 52366251
Alignment:
Q  220 ctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||||||||||||| |||||||||||||||    
T  52366216 ctcatttggtaagggataatgcacaatatgtgcagg 52366251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 22096476 - 22096442
Alignment:
Q  221 tcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||||||||||| |||||||||||||||    
T  22096476 tcatttggtaagggataatgcacaatatgtgcagg 22096442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 43362272 - 43362226
Alignment:
Q  202 tagtccccatgaacttagctcatttggtaagggataatacacaatat 248  Q
    |||| ||||||| ||||||||||||| ||||||||||| ||||||||    
T  43362272 tagttcccatgagcttagctcatttgctaagggataatgcacaatat 43362226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 48404176 - 48404134
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttct 349  Q
    |||||||||||||| |||||||| |||||||||||| ||||||    
T  48404176 gaaccccggacacctcacttattcatctttaaggtgaatttct 48404134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 29430553 - 29430598
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||| ||||||| |||||||||||| |||| ||||    
T  29430553 gaaccccggacaccctacttattcatctttaaggtgaatttatcta 29430598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 38690722 - 38690767
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||||||||||||||||   |||||||||| |||||||||    
T  38690722 gaaccccggacaccccacttattctcctttaaggtgaatttctcta 38690767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 42154564 - 42154609
Alignment:
Q  209 catgaacttagctcatttggtaagggataatacacaatatgtgcag 254  Q
    ||||| |||| || ||||||||||||||||| ||||||||||||||    
T  42154564 catgagcttaacttatttggtaagggataattcacaatatgtgcag 42154609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 45355756 - 45355712
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||||    
T  45355756 gaaccccggacaccc-acttattcatctttaaggtgaatttctcta 45355712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 45369497 - 45369453
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||||    
T  45369497 gaaccccggacaccc-acttattcatctttaaggtgaatttctcta 45369453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 49607940 - 49607977
Alignment:
Q  315 gacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  49607940 gacaccccacttatttacctttaaggtgaatttctcta 49607977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 50815763 - 50815808
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||||||||||| |||| ||||| |||||| |||||||||    
T  50815763 gaaccccggacaccccacatattcatcttaaaggtgaatttctcta 50815808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 51974803 - 51974848
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||| |||||| ||||||||||||||||||||||| |||| ||||    
T  51974803 gaacctcggacatcccacttatttatctttaaggtgaatttatcta 51974848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 18903471 - 18903418
Alignment:
Q  202 tagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  18903471 tagtccccatgagcttagctcatttggcaagggataatacacaatatgtgcagg 18903418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 6228362 - 6228311
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  6228362 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 6228311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 15717115 - 15717064
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  15717115 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 15717064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 29322079 - 29322027
Alignment:
Q  203 agtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  29322079 agtcctcatgaacttagatcatttggtaagggataatgcacaatatgtgcagg 29322027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 298
Target Start/End: Complemental strand, 24794991 - 24794901
Alignment:
Q  210 atgaacttagctcatttggtaagggataatacacaatatgtgcaggagtt--aatatgaacctcggacaccccacttatttatctttaaga 298  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||| |||   ||  ||||| |||||| |||||||||| || |||||||    
T  24794991 atgagcttagctcatttggtaagggataatgcacaatatgtgcaggggttgggattcgaaccccggacatcccacttattcatatttaaga 24794901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 25045737 - 25045784
Alignment:
Q  208 ccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  25045737 ccatgagcttagctcatttggtaagggataattcacaatatgtgcagg 25045784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 6228299 - 6228254
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  6228299 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 6228254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 18903406 - 18903361
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  18903406 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 18903361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 20415601 - 20415556
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  20415601 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 20415556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 19748103 - 19748143
Alignment:
Q  215 cttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  19748103 cttagctcatttggtaagggataatgcacaatatgtgcagg 19748143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 4854345 - 4854298
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaac 354  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||||    
T  4854345 gaaccccggacaccccacttattcatctttaaggtaaatttctctaac 4854298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 20415663 - 20415569
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcaggagtta--atatgaacctcggacaccccacttatttatctttaag 297  Q
    |||||||||  ||||||||||| |||||||||||| ||||||||||||||| |  |   |  ||||| ||||||||||||||||| |||||||||    
T  20415663 tccccatgagtttagctcattttgtaagggataatgcacaatatgtgcaggggccagggttcgaaccccggacaccccacttattcatctttaag 20415569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 17216953 - 17217046
Alignment:
Q  206 ccccatgaacttagctcatttggtaagggataatacacaatatgtgcaggagt--taatatgaacctcggacaccccacttatttatctttaag 297  Q
    |||||||| ||||||||||||||||||||||||| || |||||||| ||| ||   | |  ||||  ||||||||||||||||| |||||||||    
T  17216953 ccccatgagcttagctcatttggtaagggataatgcataatatgtgtaggggtcggagttcgaactccggacaccccacttattcatctttaag 17217046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 28536269 - 28536219
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||| |||||||||||||| |||||| |||| ||||||||||||||    
T  28536269 tccccatgagcttagctcatttggcaagggaaaatatacaatatgtgcagg 28536219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 3974503 - 3974548
Alignment:
Q  313 cggacaccccacttatttatctttaaggtggatttctctaactact 358  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||    
T  3974503 cggactccccacttattcatctttaaggtgaatttctctaactact 3974548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 17217014 - 17217059
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||    
T  17217014 gaactccggacaccccacttattcatctttaaggtgaatttctcta 17217059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 29322015 - 29321970
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||| |||| ||||||||||||||||||||||| |||||||||    
T  29322015 gaaccccagacatcccacttatttatctttaaggtgaatttctcta 29321970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 21874322 - 21874274
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgca 253  Q
    ||||||| | |||| |||||||||||||||||||| |||||||||||||    
T  21874322 tccccataagcttaactcatttggtaagggataatgcacaatatgtgca 21874274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 4854408 - 4854357
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| |||||||||||||| ||||||||||  ||||| ||||||||    
T  4854408 gtccccatgagcttagctcatttggcaagggataatgtacaatgtgtgcagg 4854357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 18618641 - 18618595
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgt 250  Q
    |||||||||| |||||||||||||||||  |||||| ||||||||||    
T  18618641 gtccccatgagcttagctcatttggtaaaagataatgcacaatatgt 18618595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 5641729 - 5641684
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||| |||||||||||||||||| | |||||||||| |||||||||    
T  5641729 gaactccggacaccccacttattcacctttaaggtgaatttctcta 5641684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 11611354 - 11611407
Alignment:
Q  207 cccatgaacttagctcatttggtaagggataatacac-aatatgtgcaggagtt 259  Q
    ||||||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||    
T  11611354 cccatgagcttagttcatttggtaagggacaatgcacaaatatgtgcaggagtt 11611407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 11611425 - 11611470
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||| |||||||||||||||| |||||||| ||| |||||||||    
T  11611425 gaaccctggacaccccacttattcatctttaatgtgaatttctcta 11611470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 38503365 - 38503308
Alignment:
Q  198 aaattagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  38503365 aaatttgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 38503308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 31250141 - 31250191
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  31250141 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 31250191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 42208913 - 42208961
Alignment:
Q  207 cccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  42208913 cccatgagcttagctcatttagtaagggataatacacaatatgtgcagg 42208961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 461997 - 462052
Alignment:
Q  202 tagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcaggag 257  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  461997 tagtccctatgaacttagctcatttggtaaggggtaatgcacaatatgtgtaggag 462052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 12375514 - 12375463
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  12375514 gtccccatgagcttagctcatttggtaatggataatgcacaatatgtgcagg 12375463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 43227860 - 43227910
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  43227860 tccctatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 43227910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 31250203 - 31250248
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  31250203 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 31250248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 38503296 - 38503251
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  38503296 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 38503251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 43227922 - 43227967
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  43227922 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 43227967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 17077360 - 17077445
Alignment:
Q  210 atgaacttagctcatttggtaagggataatacacaatatgtgcaggagt--taatatgaacctcggacaccccacttatttatctt 293  Q
    |||| ||||||||||||||||||||||||| |||||| |||||||| ||    ||  ||||| ||||||||||||||||| |||||    
T  17077360 atgagcttagctcatttggtaagggataatgcacaatttgtgcaggggtcgggattcgaaccccggacaccccacttattcatctt 17077445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 42643891 - 42643854
Alignment:
Q  218 agctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||||||||||||||| |||||||||||||||    
T  42643891 agctcatttggtaagggataatgcacaatatgtgcagg 42643854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 931040 - 930989
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| | ||||||||| ||||||||| ||| |||||||||||||||    
T  931040 gtccccatgagcatagctcattcggtaagggacaatgcacaatatgtgcagg 930989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 15680940 - 15680893
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaac 354  Q
    ||||| ||||||||||||||||| | |||||||||| |||||||||||    
T  15680940 gaacctcggacaccccacttattcacctttaaggtgaatttctctaac 15680893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 34729531 - 34729574
Alignment:
Q  311 cccggacaccccacttatttatctttaaggtggatttctctaac 354  Q
    ||||||||||||||||||| | |||||||||| |||||||||||    
T  34729531 cccggacaccccacttattcacctttaaggtgaatttctctaac 34729574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 13576313 - 13576359
Alignment:
Q  201 ttagtccccatgaacttagctcatttggtaagggataatacacaata 247  Q
    ||||||| ||||| |||| |||||||||||||||||||| |||||||    
T  13576313 ttagtcctcatgagcttaactcatttggtaagggataatgcacaata 13576359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 87784 - 87833
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgca 253  Q
    |||||||||| || | |||||||||||||||||||| |||||||| ||||    
T  87784 gtccccatgagctcaactcatttggtaagggataatgcacaatatatgca 87833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 1572166 - 1572211
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||| ||||||||||| ||||| |||||| |||||||||    
T  1572166 gaaccccggactccccacttattcatcttaaaggtgaatttctcta 1572211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 4395890 - 4395845
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||| ||||||||| ||||| |||||||||||| |||||||||    
T  4395890 gaacccctgacaccccatttattcatctttaaggtgaatttctcta 4395845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 15470660 - 15470615
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||| ||||||||| ||||| |||||||||||| |||||||||    
T  15470660 gaaccccagacaccccatttattcatctttaaggtgaatttctcta 15470615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 15470723 - 15470674
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgca 253  Q
    ||||| |||| ||||  ||||||||||||||||||| |||||||||||||    
T  15470723 gtccctatgagcttaattcatttggtaagggataatgcacaatatgtgca 15470674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 17077417 - 17077462
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| ||||| |||||| |||| ||||    
T  17077417 gaaccccggacaccccacttattcatcttaaaggtgaatttatcta 17077462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 42208972 - 42209017
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||| ||||||||| |||||||| |||||||||||| |||||||||    
T  42208972 gaactccggacacctcacttattcatctttaaggtgaatttctcta 42209017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 2259144 - 2259201
Alignment:
Q  198 aaattagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  2259144 aaatgagtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 2259201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 25165434 - 25165484
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  25165434 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 25165484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 29226320 - 29226370
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  29226320 tccccatgagcttagctcatttggtaagggataacacacaatatgtgcagg 29226370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 39739260 - 39739318
Alignment:
Q  197 aaaattagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||| | ||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  39739260 aaaattaattcccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 39739318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 47864631 - 47864724
Alignment:
Q  206 ccccatgaacttagctcatttggtaagggataatacacaatatgtgcaggagtt--aatatgaacctcggacaccccacttatttatctttaag 297  Q
    |||||| | ||||||||||||||||||||||||| ||||||||||||||| |||    |  ||||| ||||||||||||||||| |||||||||    
T  47864631 ccccataagcttagctcatttggtaagggataatgcacaatatgtgcaggggttggggttcgaaccccggacaccccacttattcatctttaag 47864724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 30162650 - 30162699
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgca 253  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  30162650 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgca 30162699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 46247251 - 46247304
Alignment:
Q  202 tagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  46247251 tagtccccatgagcttagctcatttggtaagggataatgcacaatttgtgcagg 46247304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 11483606 - 11483657
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||||||||||||||| || ||||||||||||    
T  11483606 gtccccatgagcttagctcatttggtaagggataatgcaaaatatgtgcagg 11483657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 33528307 - 33528256
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  33528307 gtccccatgagcttagctcatttggtaagggataatgcacaatttgtgcagg 33528256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 34225192 - 34225239
Alignment:
Q  208 ccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  34225192 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 34225239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 46798572 - 46798626
Alignment:
Q  201 ttagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||||| |||| |||||||||| ||||||||| |||||||||||||||    
T  46798572 ttagtccccatgagcttaactcatttggtgagggataatgcacaatatgtgcagg 46798626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 29645866 - 29645821
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  29645866 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 29645821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 47864692 - 47864737
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  47864692 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 47864737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 55426107 - 55426156
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgca 253  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||||||    
T  55426107 gtccccatgagcttagctcatttggtaaaggataatgcacaatatgtgca 55426156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 42913502 - 42913446
Alignment:
Q  199 aattagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||||| || ||||||||||||| ||||||| ||| |||||||||||||||    
T  42913502 aattagtccccacgagcttagctcatttgctaagggaaaatgcacaatatgtgcagg 42913446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 1084138 - 1084079
Alignment:
Q  196 gaaaattagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||| ||||||||||| ||||||||||||| ||| |||||||  ||||||||||||||    
T  1084138 gaaaatcagtccccatgagcttagctcatttgttaaaggataatgtacaatatgtgcagg 1084079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 36590383 - 36590434
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||  ||||||||||||||||||||||||  ||||||||||||||    
T  36590383 gtccccatgagattagctcatttggtaagggataatgtacaatatgtgcagg 36590434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 46798638 - 46798685
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaac 354  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  46798638 gaaccctggacaccccacttattcatctttaaggtagatttctctaac 46798685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 50381707 - 50381758
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| |||| |||||||||||||||||||| |||||||| ||||||    
T  50381707 gtccccatgagcttaactcatttggtaagggataatgcacaatatatgcagg 50381758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 27394562 - 27394608
Alignment:
Q  306 tgaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||||||||||||||||| | |||||||||| |||||||||    
T  27394562 tgaaccccggacaccccacttattcacctttaaggtgaatttctcta 27394608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 11483669 - 11483714
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||    
T  11483669 gaactccggacaccccacttattcatctttaaggtgaatttctcta 11483714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 27471560 - 27471605
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||    
T  27471560 gaaccccggacaccccacttattcatctttaaggtaaatttctcta 27471605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 27817171 - 27817118
Alignment:
Q  202 tagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||| |||| |||| |||||||||||||||||||| |||||| ||||||||    
T  27817171 tagtccctatgagcttacctcatttggtaagggataatgcacaatttgtgcagg 27817118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 29226382 - 29226427
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||| |||||||||||||| |||||||||||| |||||||||    
T  29226382 gaaccccgtacaccccacttattcatctttaaggtgaatttctcta 29226427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 33528244 - 33528199
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||||    
T  33528244 gaaccccagacaccccacttattcatctttaaggtgaatttctcta 33528199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 39739330 - 39739375
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||||||| |||||||| |||||||||||| |||||||||    
T  39739330 gaaccccggacacctcacttattcatctttaaggtgaatttctcta 39739375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 49429516 - 49429561
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||    
T  49429516 gaaccccggacaccccacttattcacctttaaggtgaatttctcta 49429561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 50381774 - 50381815
Alignment:
Q  311 cccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  50381774 cccggacaccccacttattcatctttaaggtgaatttctcta 50381815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 7517934 - 7517986
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcaggag 257  Q
    ||||||| | ||||||||||||||||||||||| | |||||| ||||||||||    
T  7517934 tccccattagcttagctcatttggtaagggatattgcacaatttgtgcaggag 7517986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 440 - 504
Target Start/End: Original strand, 9638115 - 9638179
Alignment:
Q  440 aagataatcaaagcataaatgatttttagaatttcagccatattttgtctccttaacttgcatgt 504  Q
    ||||| || ||| ||||||  ||||||||||||||||||||||| ||| ||||||| ||||||||    
T  9638115 aagatgatgaaaacataaagaatttttagaatttcagccatattatgtgtccttaaattgcatgt 9638179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 32421340 - 32421392
Alignment:
Q  203 agtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||| |||||||||| |||||||||||||| || ||||| ||||||    
T  32421340 agtccccatgagcttagctcatctggtaagggataatgcataatatatgcagg 32421392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 7239799 - 7239846
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtg 251  Q
    |||||| ||| ||||| ||||||||||||||||| |||||||||||||    
T  7239799 gtccccgtgagcttagttcatttggtaagggatattacacaatatgtg 7239846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 8258145 - 8258196
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| |||| |||||||||||| || |||| |||||||||||||||    
T  8258145 gtccccatgagcttaactcatttggtaatggttaatgcacaatatgtgcagg 8258196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 50676906 - 50676859
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaac 354  Q
    |||||||| |||||||||||||| | |||||||||| |||||||||||    
T  50676906 gaaccccgaacaccccacttattcacctttaaggtgaatttctctaac 50676859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 985959 - 985913
Alignment:
Q  306 tgaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||| ||||||||||||||||||| ||||| |||||| |||||||||    
T  985959 tgaatcccggacaccccacttattcatcttaaaggtgaatttctcta 985913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 7239858 - 7239903
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||| || ||||||||||||||  |||||||||||||||||||||    
T  7239858 gaacctcgaacaccccacttattcgtctttaaggtggatttctcta 7239903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 31435540 - 31435495
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||| |||||| |||||||||| |||||||||||| |||||||||    
T  31435540 gaacctcggacatcccacttattcatctttaaggtgaatttctcta 31435495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 38668192 - 38668229
Alignment:
Q  315 gacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  38668192 gacaccccacttattcatctttaaggtgaatttctcta 38668229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 45431683 - 45431724
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttc 348  Q
    ||||||||||||||||||||||| | |||||||||| |||||    
T  45431683 gaaccccggacaccccacttattcacctttaaggtgaatttc 45431724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 5e-16; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 48433813 - 48433761
Alignment:
Q  203 agtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  48433813 agtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 48433761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 40273814 - 40273865
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  40273814 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 40273865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 12166068 - 12166126
Alignment:
Q  197 aaaattagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||| |||| |||||||||||||||||||||||||||||||| |||||| ||||||||    
T  12166068 aaaatgagtcaccatgaacttagctcatttggtaagggataatgcacaatttgtgcagg 12166126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 23824693 - 23824644
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgca 253  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  23824693 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgca 23824644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 27454007 - 27454095
Alignment:
Q  207 cccatgaacttagctcatttggtaagggataatacacaatatgtgcaggagttaa--tatgaacctcggacaccccacttatttatctt 293  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||||||| ||  |  |  ||||||||||||||||||||||| |||||    
T  27454007 cccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggggtcgaggttcgaacctcggacaccccacttattcatctt 27454095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 31793524 - 31793569
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  31793524 gaaccccggacaccccacttattcatctttaaggtggatttctcta 31793569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 1575687 - 1575738
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||| ||||    
T  1575687 gtccccatgagcttaactcatttggtaagggataatacacaatatgtacagg 1575738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 26456107 - 26456056
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  26456107 gtccccatgagcttagctcatttggtaagggacaatgcacaatatgtgcagg 26456056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 42554631 - 42554678
Alignment:
Q  208 ccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  42554631 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 42554678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 42338348 - 42338298
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  42338348 tccccatgagcttagctcatttggtaaggaataatgcacaatatgtgcagg 42338298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 297
Target Start/End: Original strand, 31793460 - 31793556
Alignment:
Q  203 agtccccatgaacttagctcatttggtaagggataatacacaatatgtgcaggagt--taatatgaacctcggacaccccacttatttatctttaag 297  Q
    ||||| ||||| ||||||||||||| ||||||||||| ||||||||||||||| ||     |  ||||| ||||||||||||||||| |||||||||    
T  31793460 agtccacatgagcttagctcatttgttaagggataatgcacaatatgtgcaggggtcggggttcgaaccccggacaccccacttattcatctttaag 31793556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 40273877 - 40273922
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  40273877 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 40273922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 48433748 - 48433704
Alignment:
Q  308 aaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  48433748 aaccccggacaccccacttattcatctttaaggtgaatttctcta 48433704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 3889839 - 3889792
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaac 354  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  3889839 gaaccccggacaccccacttattcatcttaaaggtgaatttctctaac 3889792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 3902375 - 3902324
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||| || ||||||||||||||||||||||||| || ||||||||||||    
T  3902375 gtccccacgagcttagctcatttggtaagggataatgcaaaatatgtgcagg 3902324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 12166138 - 12166189
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaactact 358  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||| |||||    
T  12166138 gaaccccagacaccccacttattcatctttaaggtgaatttctctagctact 12166189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 33248904 - 33248854
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcag 254  Q
    |||||||||| |||||||||||||||||||||| || |||||||| |||||    
T  33248904 gtccccatgagcttagctcatttggtaagggatgatgcacaatatatgcag 33248854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 36528321 - 36528275
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgt 250  Q
    |||||||||| |||| |||||||||||||||||||| ||||||||||    
T  36528321 gtccccatgagcttaactcatttggtaagggataatgcacaatatgt 36528275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 38378274 - 38378320
Alignment:
Q  306 tgaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||    
T  38378274 tgaaccccggacaccccacttattcatttttaaggtgaatttctcta 38378320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 4956131 - 4956086
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||| |||||||||||||||| |||||||||||| |||||||||    
T  4956131 gaaccctggacaccccacttattcatctttaaggtgaatttctcta 4956086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 43440683 - 43440732
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcag 254  Q
    ||||| ||||||||| | ||||||||||||||||| ||||||||||||||    
T  43440683 tccccgtgaacttagtttatttggtaagggataatgcacaatatgtgcag 43440732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 46266661 - 46266709
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgc 252  Q
    |||||||||| |||| |||||||||||||||||||| |||||| |||||    
T  46266661 gtccccatgagcttaactcatttggtaagggataatgcacaatttgtgc 46266709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 14707286 - 14707321
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataat 239  Q
    |||||||||| |||||||||||||||||||||||||    
T  14707286 gtccccatgagcttagctcatttggtaagggataat 14707321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 24029978 - 24030025
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtg 251  Q
    ||||||||||  |||||||||||| ||||||||||| |||||||||||    
T  24029978 gtccccatgagtttagctcatttgataagggataatgcacaatatgtg 24030025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 34322126 - 34322075
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||| | | ||||||||||| ||||||||||| |||||||||||||||    
T  34322126 gtccccataagcatagctcatttgataagggataatgcacaatatgtgcagg 34322075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 38378212 - 38378263
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||  |||| | ||||||||||||||||| |||||||||||||||    
T  38378212 gtccccatgagtttagtttatttggtaagggataatgcacaatatgtgcagg 38378263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 20529955 - 20529997
Alignment:
Q  310 ccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||||||||||||| | |||||||||| |||||||||    
T  20529955 ccccggacaccccacttattcacctttaaggtgaatttctcta 20529997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 33248841 - 33248799
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttct 349  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||    
T  33248841 gaaccccggacaccctacttattcatctttaaggtgaatttct 33248799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 44986587 - 44986629
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaat 246  Q
    |||| ||||| ||||||||||||||||||||||||| ||||||    
T  44986587 gtcctcatgagcttagctcatttggtaagggataatgcacaat 44986629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 23824627 - 23824586
Alignment:
Q  311 cccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||| ||||||| |||||||||||| |||||||||    
T  23824627 cccggacaccctacttattcatctttaaggtgaatttctcta 23824586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 24030041 - 24030086
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||| ||||||||| ||||| |||||||||||| |||||||||    
T  24030041 gaaccccagacaccccatttattcatctttaaggtgaatttctcta 24030086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 42841820 - 42841775
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||| ||||||||||||||| ||||| |||||| |||||||||    
T  42841820 gaaccccagacaccccacttattcatcttaaaggtgaatttctcta 42841775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 43440753 - 43440790
Alignment:
Q  315 gacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  43440753 gacaccccacttattcatctttaaggtgaatttctcta 43440790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 5e-16; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 34702416 - 34702364
Alignment:
Q  203 agtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  34702416 agtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 34702364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 49619964 - 49620016
Alignment:
Q  203 agtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  49619964 agtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 49620016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 35527437 - 35527390
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtg 251  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  35527437 gtccccatgaacttagctcatttggtaagggataatgcacaatatgtg 35527390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 50011500 - 50011551
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  50011500 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 50011551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 24134725 - 24134675
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  24134725 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 24134675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 47651868 - 47651916
Alignment:
Q  207 cccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  47651868 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 47651916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 27054683 - 27054734
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||||||||||||||| |||||||| ||||||    
T  27054683 gtccccatgagcttagctcatttggtaagggataatgcacaatatctgcagg 27054734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 39304305 - 39304254
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||||||||||||||| || ||||||||||||    
T  39304305 gtccccatgagcttagctcatttggtaagggataatgcataatatgtgcagg 39304254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 2017786 - 2017737
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgca 253  Q
    |||| ||||| ||||||||||||||||||||||||| |||||||||||||    
T  2017786 gtcctcatgagcttagctcatttggtaagggataatgcacaatatgtgca 2017737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 15417919 - 15417823
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcaggagtt--aatatgaacctcggacaccccacttatttatctttaaga 298  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| | |    |  ||| ||||||||||||||||||| ||||||||||    
T  15417919 gtccccatgagcttagctcatttggtaaaggataatgcacaatatgtgtaggggctggggttcgaagctcggacaccccacttattcatctttaaga 15417823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 24134663 - 24134618
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  24134663 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 24134618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 40061499 - 40061544
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||    
T  40061499 gaactccggacaccccacttattcatctttaaggtggatttctcta 40061544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 43109345 - 43109289
Alignment:
Q  199 aattagtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||| ||| |||||| ||||||||||||||||||||||||| || ||||||||||||    
T  43109345 aatttgtctccatgagcttagctcatttggtaagggataatgcaaaatatgtgcagg 43109289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 48497312 - 48497264
Alignment:
Q  207 cccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||  |||||||||||||||||||||||| |||||||||||||||    
T  48497312 cccatgagtttagctcatttggtaagggataatgcacaatatgtgcagg 48497264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 52164405 - 52164353
Alignment:
Q  312 ccggacaccccacttatttatctttaaggtggatttctctaactacttcacaa 364  Q
    |||||||||||||||||| || ||||||||| |||||||||||||||| ||||    
T  52164405 ccggacaccccacttattaatttttaaggtgaatttctctaactacttgacaa 52164353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 12973380 - 12973329
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||  |||||||||||||||||||||||| |||||||| ||||||    
T  12973380 gtccccatgagtttagctcatttggtaagggataatgcacaatatatgcagg 12973329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 15550879 - 15550926
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtg 251  Q
    |||||||||| |||| |||||||||||||||||||| |||||||||||    
T  15550879 gtccccatgagcttatctcatttggtaagggataatgcacaatatgtg 15550926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 22386338 - 22386287
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||| || |||||||||||||||||||||| || |||||||||||||||    
T  22386338 gtccccacgagcttagctcatttggtaagggattatgcacaatatgtgcagg 22386287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 50065003 - 50065054
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||| | ||||||||||||| ||||||||||| |||||||||||||||    
T  50065003 gtccccataagcttagctcatttgataagggataatgcacaatatgtgcagg 50065054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 4126892 - 4126942
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcag 254  Q
    ||||||||||  |||||||||||||||||||||||| |||||||| |||||    
T  4126892 gtccccatgagtttagctcatttggtaagggataatgcacaatatatgcag 4126942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 29332339 - 29332385
Alignment:
Q  306 tgaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||||||||||||||||| | |||||||||| |||||||||    
T  29332339 tgaaccccggacaccccacttattcacctttaaggtgaatttctcta 29332385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 35309718 - 35309756
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataataca 242  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  35309718 gtccccatgagcttagctcatttggtaagggataataca 35309756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 3347742 - 3347697
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||| |||||||||||||| |||||||||||| |||||||||    
T  3347742 gaaccccgtacaccccacttattcatctttaaggtgaatttctcta 3347697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 14262760 - 14262715
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||||    
T  14262760 gaaccccggacaccctacttattcatctttaaggtgaatttctcta 14262715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 19424102 - 19424147
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||    
T  19424102 gaaccccggacaccccacttattcacctttaaggtgaatttctcta 19424147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 49239886 - 49239841
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||    
T  49239886 gaaccccggacaccccacttattcatctttaaggtaaatttctcta 49239841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 50302948 - 50302903
Alignment:
Q  209 catgaacttagctcatttggtaagggataatacacaatatgtgcag 254  Q
    |||||| |||||||||||||||||||||||| || |||||||||||    
T  50302948 catgaatttagctcatttggtaagggataatgcataatatgtgcag 50302903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 7438617 - 7438661
Alignment:
Q  207 cccatgaacttagctcatttggtaagggataatacacaatatgtg 251  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||||    
T  7438617 cccatgagcttagctcatttggtaagggataatgcacaatttgtg 7438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 25031531 - 25031491
Alignment:
Q  312 ccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  25031531 ccggacaccccacttattcatctttaaggtgaatttctcta 25031491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 35527603 - 35527567
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataata 240  Q
    |||||||||| ||||||||||||||||||||||||||    
T  35527603 gtccccatgagcttagctcatttggtaagggataata 35527567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 8893853 - 8893904
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||| ||||| ||||| ||||||||||||||||||| |||||||||| ||||    
T  8893853 gtccacatgagcttagttcatttggtaagggataatgcacaatatgtacagg 8893904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 349
Target Start/End: Complemental strand, 10790533 - 10790490
Alignment:
Q  306 tgaaccccggacaccccacttatttatctttaaggtggatttct 349  Q
    |||||||||||||||| ||||||||| |||||||||| ||||||    
T  10790533 tgaaccccggacaccctacttatttacctttaaggtgaatttct 10790490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 12148611 - 12148568
Alignment:
Q  308 aaccccggacaccccacttatttatctttaaggtggatttctct 351  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||    
T  12148611 aaccccagacaccccacttattcatctttaaggtgaatttctct 12148568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 351
Target Start/End: Original strand, 35308470 - 35308509
Alignment:
Q  312 ccggacaccccacttatttatctttaaggtggatttctct 351  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  35308470 ccggacacctcacttatttatctttaaggtgaatttctct 35308509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 40061435 - 40061482
Alignment:
Q  203 agtccccatgaacttagctcatttggtaagggataatacacaatatgt 250  Q
    ||||||||||| |||| |||||||||||||||||| | ||||||||||    
T  40061435 agtccccatgagcttaactcatttggtaagggatagtgcacaatatgt 40061482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 49620030 - 49620073
Alignment:
Q  309 accccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||    
T  49620030 accccggacaccccacttattcatctttaaagtgaatttctcta 49620073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 50011563 - 50011614
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaactact 358  Q
    ||||||| |||| |||||||||| |||||||||||| ||||||||| |||||    
T  50011563 gaaccccagacatcccacttattcatctttaaggtgaatttctctagctact 50011614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 50065072 - 50065111
Alignment:
Q  313 cggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  50065072 cggacaccccacttattcatctttaaggtgaatttctcta 50065111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 20267921 - 20267883
Alignment:
Q  316 acaccccacttatttatctttaaggtggatttctctaac 354  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  20267921 acaccccacttatttacctttaaggtgaatttctctaac 20267883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 25585407 - 25585357
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||| ||||| ||||||||||| |||| || |||||||||||||||    
T  25585407 tccccatgagcttagttcatttggtaaaggatgatgcacaatatgtgcagg 25585357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 354
Target Start/End: Complemental strand, 25800371 - 25800325
Alignment:
Q  308 aaccccggacaccccacttatttatctttaaggtggatttctctaac 354  Q
    |||||||||||||||||||||| ||||| |||||| |||||| ||||    
T  25800371 aaccccggacaccccacttattcatcttaaaggtgaatttctttaac 25800325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 35309780 - 35309822
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttct 349  Q
    |||||||| |||||||||||||| |||||||||||| ||||||    
T  35309780 gaaccccgaacaccccacttattcatctttaaggtgaatttct 35309822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 42946507 - 42946461
Alignment:
Q  306 tgaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||||||||||||||||| | ||| |||||| |||||||||    
T  42946507 tgaaccccggacaccccacttattcaccttaaaggtgaatttctcta 42946461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 47428994 - 47428948
Alignment:
Q  207 cccatgaacttagctcatttggtaagggataatacacaatatgtgca 253  Q
    |||||||  ||||||||| |||||||||||| |||||||||||||||    
T  47428994 cccatgagtttagctcatctggtaagggatagtacacaatatgtgca 47428948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 10123092 - 10123047
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||  |||||||||||||| |||||||||||| |||||||||    
T  10123092 gaaccccaaacaccccacttattcatctttaaggtgaatttctcta 10123047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 16985974 - 16985929
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||  ||||||| |||||||||||| |||||||||    
T  16985974 gaaccccggacacctaacttattcatctttaaggtgaatttctcta 16985929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 30735827 - 30735872
Alignment:
Q  210 atgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||| |||| |||||||||||||||||||| |||||| ||||||||    
T  30735827 atgagcttaactcatttggtaagggataatgcacaatttgtgcagg 30735872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 43109277 - 43109232
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||||||| || ||||| |||||||||||| |||||||||    
T  43109277 gaaccccggacacctcatttattcatctttaaggtgaatttctcta 43109232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 13906728 - 13906677
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  13906728 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 13906677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 41454929 - 41454878
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  41454929 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 41454878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 1032564 - 1032614
Alignment:
Q  205 tccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  1032564 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 1032614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 884 - 950
Target Start/End: Complemental strand, 33177215 - 33177149
Alignment:
Q  884 tggatgaaatgcttaaaaagagcataacaacaattctgtcaaaaattgttgttttgatggtagacct 950  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||  ||||| |||| ||||||||    
T  33177215 tggatgaaatgcttaaaaagaacataacaacaattctgtcaagaatccttgttctgatagtagacct 33177149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 10161957 - 10162008
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||||||||    
T  10161957 gtccccatgagcttagctcatctggtaagggataatgcacaatatgtgcagg 10162008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 30466672 - 30466723
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| |||||||||||||||||||| |||| |||||||||||||||    
T  30466672 gtccccatgagcttagctcatttggtaagggctaatgcacaatatgtgcagg 30466723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 41845527 - 41845480
Alignment:
Q  208 ccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  41845527 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcagg 41845480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 44828535 - 44828484
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  44828535 gtccccatgagcttagctcatttggtaagggataatgcacaatttgtgcagg 44828484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 29114098 - 29114146
Alignment:
Q  207 cccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||||    
T  29114098 cccatgaacttagctcatttgataagggataatgcacaatttgtgcagg 29114146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 38064032 - 38064080
Alignment:
Q  306 tgaaccccggacaccccacttatttatctttaaggtggatttctctaac 354  Q
    |||||||| ||||||||||||||| |||||||||||| |||||||||||    
T  38064032 tgaaccccagacaccccacttattcatctttaaggtgaatttctctaac 38064080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 38289326 - 38289286
Alignment:
Q  215 cttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  38289326 cttagctcatttggtaagggataatgcacaatatgtgcagg 38289286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 4259852 - 4259903
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||| ||||| |||| |||||||||||||||||||| |||||||||||||||    
T  4259852 gtccgcatgagcttaactcatttggtaagggataatgcacaatatgtgcagg 4259903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 38544951 - 38544917
Alignment:
Q  320 cccacttatttatctttaaggtggatttctctaac 354  Q
    |||||||||||||||||||||||||||||||||||    
T  38544951 cccacttatttatctttaaggtggatttctctaac 38544917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 39104612 - 39104650
Alignment:
Q  216 ttagctcatttggtaagggataatacacaatatgtgcag 254  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  39104612 ttagctcatttggtaagggataatgcacaatatgtgcag 39104650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 1032626 - 1032671
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||||    
T  1032626 gaaccccagacaccccacttattcatctttaaggtgaatttctcta 1032671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 8350429 - 8350521
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcaggag--ttaatatgaacctcggacaccccacttatttatcttt 294  Q
    |||||||| | |||| ||||||||||||| ||||||||||||||| |||||| |    | |  ||||||||||||||||||||||| ||||||    
T  8350429 gtccccataagcttaactcatttggtaagtgataatacacaatatatgcaggggccggagttcgaacctcggacaccccacttattcatcttt 8350521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 19957360 - 19957315
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||    
T  19957360 gaaccccggacaccccacttattcacctttaaggtgaatttctcta 19957315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 39104663 - 39104707
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  39104663 gaaccccggacaccc-acttattcatctttaaggtggatttctcta 39104707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 41454866 - 41454821
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||||    
T  41454866 gaaccccggacaccccacttattcatctttaatgtgaatttctcta 41454821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 4259916 - 4259960
Alignment:
Q  308 aaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||    
T  4259916 aaccccggactccccacttattcatctttaaggtgaatttctcta 4259960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 19733172 - 19733120
Alignment:
Q  203 agtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||| | ||||||||||||||||||||||||| || ||||| ||||||    
T  19733172 agtccccataagcttagctcatttggtaagggataatgcataatatatgcagg 19733120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 34038047 - 34037999
Alignment:
Q  207 cccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||| |||| || ||||| |||||||||||||||||||||||||||    
T  34038047 cccatgagcttaacttatttgataagggataatacacaatatgtgcagg 34037999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 36587753 - 36587705
Alignment:
Q  203 agtccccatgaacttagctcatttggtaagggataatacacaatatgtg 251  Q
    ||||||||||| |||| ||||||||||||| ||||| ||||||||||||    
T  36587753 agtccccatgagcttaactcatttggtaagagataaaacacaatatgtg 36587705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 5904413 - 5904362
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctctaactact 358  Q
    |||||||||||| |||||||||| ||||||||| || ||||||||| |||||    
T  5904413 gaaccccggacatcccacttattcatctttaagatgaatttctctagctact 5904362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 23139067 - 23139118
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| |||||||||||||  |||||||||| |||||| ||||||||    
T  23139067 gtccccatgagcttagctcatttgacaagggataatgcacaatgtgtgcagg 23139118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 33820486 - 33820447
Alignment:
Q  215 cttagctcatttggtaagggataatacacaatatgtgcag 254  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  33820486 cttagctcatttggtatgggataatacacaatttgtgcag 33820447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 38063970 - 38064021
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| ||||  ||||||||||||||||||| |||||| ||||||||    
T  38063970 gtccccatgagcttaattcatttggtaagggataatgcacaatttgtgcagg 38064021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 36104019 - 36103973
Alignment:
Q  209 catgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||| |||| |||||||||||| ||||||| |||||||||||||||    
T  36104019 catgagcttaactcatttggtaaaggataatgcacaatatgtgcagg 36103973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 36587688 - 36587646
Alignment:
Q  308 aaccccggacaccccacttatttatctttaaggtggatttctc 350  Q
    ||||||| |||||||||||||||||||||||| || |||||||    
T  36587688 aaccccgaacaccccacttatttatctttaagatgaatttctc 36587646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 38545015 - 38544977
Alignment:
Q  215 cttagctcatttggtaagggataatacacaatatgtgca 253  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  38545015 cttacctcatttggtaagggataatgcacaatatgtgca 38544977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 280084 - 280047
Alignment:
Q  218 agctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  280084 agctcatttggtaagggataatgtacaatatgtgcagg 280047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 635768 - 635805
Alignment:
Q  218 agctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  635768 agctcatttggtaagggataatgtacaatatgtgcagg 635805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 821571 - 821608
Alignment:
Q  218 agctcatttggtaagggataatacacaatatgtgcagg 255  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  821571 agctcatttggtaagggataatgtacaatatgtgcagg 821608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 8145835 - 8145876
Alignment:
Q  313 cggacaccccacttatttatctttaaggtggatttctctaac 354  Q
    ||||||||||||||||| | |||||||||| |||||||||||    
T  8145835 cggacaccccacttattcacctttaaggtgaatttctctaac 8145876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 43456743 - 43456710
Alignment:
Q  215 cttagctcatttggtaagggataatacacaatat 248  Q
    ||||||||||||||||||||||||| ||||||||    
T  43456743 cttagctcatttggtaagggataatgcacaatat 43456710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 121901 - 121850
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||||||    
T  121901 gtccccatgagcttagctcatttggtaggggataatgcacaatatgtgcagg 121850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 419705 - 419756
Alignment:
Q  204 gtccccatgaacttagctcatttggtaagggataatacacaatatgtgcagg 255  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  419705 gtccccatgagcttagctcatttggtaagggataatgaacaatatgtgcagg 419756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 419768 - 419813
Alignment:
Q  307 gaaccccggacaccccacttatttatctttaaggtggatttctcta 352  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  419768 gaaccccggacaccccacttattcatctttaaggtgaatttctcta 419813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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