View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868-Insertion-4 (Length: 1062)
Name: NF4868-Insertion-4
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 409 - 869
Target Start/End: Complemental strand, 2752360 - 2751896
Alignment:
| Q |
409 |
attaaacaaacaagttagttatatattatttccttcattcgaagattcacacgggttgatgaagctccaagttattatagaccaagtcaaatttccacac |
508 |
Q |
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| T |
2752360 |
attaaacaaagaagttagttat----tatttcctgcattcgaagattcacacgggttga---agctccaagttattatagaccaagtcaaatttccacac |
2752268 |
T |
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| Q |
509 |
acttcacaatacgcaacataaggttcaaagtcattgatttatattattc----aagagtcacctctttaac---gtgatagcaatggtccacataggttg |
601 |
Q |
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| T |
2752267 |
acctcacaatacgcaacataagattcaaagtcattgatttatattatttgttaaagagtcacccctttaacaacgtgatagcaatggtccacataggttg |
2752168 |
T |
|
| Q |
602 |
gcatatct-----tcctttattttctattcaaagatacaaacattgactgaattaacaaatatacaaaaactatgataccnnnnnnnnttgtttttacta |
696 |
Q |
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| T |
2752167 |
gcatatctaatcttcctttattttctattcaaagatacaaacattgactgaattaacaaatatacaaaaactatgataccaaaaaaaattgtttttacta |
2752068 |
T |
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| Q |
697 |
tggtgtgtgacaaattgtttgtcaaatgaatactgctttattaaaaataagtttggaataattgtgtatagtt--tttgtttatctcatgatataaacac |
794 |
Q |
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| T |
2752067 |
tggtgtgtgacaaattgtttgtca----aatactgctttattaaaaatgagtttggaataattgtgtatagtttatttgtttatctcatgatataaacac |
2751972 |
T |
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| Q |
795 |
ttaggagaatgaataaacaaatatagctactttt-ttataggtccatatgaatatgacattcattgtactactaga |
869 |
Q |
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| T |
2751971 |
ttaggagaatgaataaacaaatatagctacttttcttataggtccatatgaatatgacattcattgtactactaga |
2751896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 2752577 - 2752503
Alignment:
| Q |
8 |
agtttgagcttgacttgttaaagataaaagattagtgaagtttgggattgaattgttaaagctcaatgatatctt |
82 |
Q |
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| T |
2752577 |
agtttgagcttgacttgttaaagataaaagattagtgaagtttgggattgaattgttaaagctcaatgatatctt |
2752503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 933 - 1026
Target Start/End: Complemental strand, 2751825 - 2751729
Alignment:
| Q |
933 |
ttattctttctatctttgt-acttttgtagaattgtgcaaaaata-caaacactacaaaaacatgt-acttttgtaggttaaaaagagctaataaaa |
1026 |
Q |
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| T |
2751825 |
ttattctttctatctttgttacttttgtagaattgtgcaaaaataacaaacactacaaaaacatgttacttttgtaggttaaaaagagctaataaaa |
2751729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 2752469 - 2752429
Alignment:
| Q |
162 |
ttaacattaggtattcgtgaatcgtcatgtcgaacaacgag |
202 |
Q |
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| T |
2752469 |
ttaacattaggtattcgtgaaccgtcatgtcgaacgacgag |
2752429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 27629619 - 27629586
Alignment:
| Q |
284 |
taacaatatactaacaattaacatttgtttataa |
317 |
Q |
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| T |
27629619 |
taacaatatactaacaattaacatttgtatataa |
27629586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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