View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868-Insertion-6 (Length: 1011)
Name: NF4868-Insertion-6
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 726; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 8 - 998
Target Start/End: Complemental strand, 32997837 - 32996852
Alignment:
| Q |
8 |
taaagttcctccaacagggttatcagatgtagctgtgaaatggatacagttcgagaaagacaatgttaaccaagtacttaaagcagccatggcaataaat |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32997837 |
taaagttcctccaacagggttatcagatgtagctgtgaaatggatacagttcgagaaagacaatgttaaccaagtacttaaagcagccatggcaataaat |
32997738 |
T |
|
| Q |
108 |
gctcaagtactatcagagatggagatacctgacaactacatcgaatctctccctaaggtaatataattaagggtcggtttagattgatttatttgcgctt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32997737 |
gctcaagtactatcagagatggagatacctgacaactacatcgaatctctccctaaggtaatataattaagggtcggtttagattgatttatttgcgctt |
32997638 |
T |
|
| Q |
208 |
gtaatataagcacttgtgagaccgtttgagagagctttttnnnnnnncgctttatgatctcacggtatggtatagagataatgctgaaatctttatgtaa |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32997637 |
gtaatataagcacttgtgagaccgtttgagagagcttat-aaaaaaacgctttatgatctcacggtatggtatagagataatgctgaaatctttatgtaa |
32997539 |
T |
|
| Q |
308 |
ctaagtttttattttctttcatgtctttgtcagaatggtagagaaagccttggtgagtcgatctataagtgcattactgtggaatattttgatccgggac |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
32997538 |
ctaagtttttattttctttcatgtctttgtcagaatggtagagaaagccttggtgagtcaatctataagtgcattactgtggaatactttgatccgggac |
32997439 |
T |
|
| Q |
408 |
aattcctctcaacaatggacatgaccaccgaacataaagttcttgacctcaagaataggattgaagcttctattgtaatatggaaaaggaagatgaataa |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32997438 |
aattcctctcaacaatggacatgaccaccgaacataaagttcttgacctcaagaataggattgaagcttctattgtaatatggaaaaggaagatgaataa |
32997339 |
T |
|
| Q |
508 |
agacggaaaatcttcatggagttcagcaataagcatggagaagagagaactctttgaagagagagcagaaacaatattgttgatgatcaaacaagagttt |
607 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32997338 |
agatggaaaatcttcatggagttcagcaataagcatggagaagagagaactctttgaagagagagcagaaacaatattgttgatgatcaaacaagagttt |
32997239 |
T |
|
| Q |
608 |
ccaggacttctacagtcttcacttgatatcagcaaaatccaatacagcaaggtgataacaacgttacactcttatctgaattattgtttgactcactttt |
707 |
Q |
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| T |
32997238 |
ccaggacttccacagtcttcacttgatatcagcaaaatccaatacaacaaggtgataacaacgttacactcttatctgaattattgttcgactcactttt |
32997139 |
T |
|
| Q |
708 |
atctaagtttatccaaacaccgataactttacattaaaatcacttcttacggaaattaactttacaaaatcaaatttcgctagcacaaaaccaaacatgg |
807 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||| | |
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|
| T |
32997138 |
atctgaatttatccaaacaccgataactttacattaaactcacttcttacggaaattaactttatgaaatcaaatttcgctacaacaaaatcaagcatag |
32997039 |
T |
|
| Q |
808 |
actaatagattgtttattgttgagtgtggatcatattatattgataagtgggccggtcgctctaaactgccctttagaccatattatttaaacacaagtt |
907 |
Q |
| |
|
||||||| || ||||| | ||| ||||| | || ||||| ||||| |||||||||| | | |||||| || || |||| || || |||| |
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| T |
32997038 |
actaata------ttcatgttggttatggctcatagtttactgataggtggggcggtcgctcttgatttccctttggatggtagtattgaatcatgagtt |
32996945 |
T |
|
| Q |
908 |
ataatatgtaactctaagtttgaataagagaaaatcactgctattactctatattcggagac--aggcataactagccgaacttcgtgatcaa |
998 |
Q |
| |
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||||||| |||| |||||||||||| | ||||||||||||| | |||||||| |||||||| ||||| |||||| |||||||||||||||| |
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| T |
32996944 |
ataatatctaaccctaagtttgaattatagaaaatcactgcaacgactctatagtcggagacataggcacaactagtcgaacttcgtgatcaa |
32996852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 43811959 - 43811871
Alignment:
| Q |
78 |
caagtacttaaagcagccatggcaataaatgctcaagtactatcagagatggagatacctgacaactacatcgaatctctccctaaggt |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | ||||| |||||||| ||||| ||||| || ||||| ||||| ||||| |
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|
| T |
43811959 |
caagtacttaaagcagccatggcaataaatgctcaggttttgtcagaaatggagatccctgagaactatattgaatccctccccaaggt |
43811871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 883 - 944
Target Start/End: Complemental strand, 2888866 - 2888805
Alignment:
| Q |
883 |
agaccatattatttaaacacaagttataatatgtaactctaagtttgaataagagaaaatca |
944 |
Q |
| |
|
||||| ||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||| |
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|
| T |
2888866 |
agaccgtattatttaaacacaagttgtaatctgtaactctaagcttgaataatagaaaatca |
2888805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 3549364 - 3549453
Alignment:
| Q |
78 |
caagtacttaaagcagccatggcaataaatgctcaagtactatcagagatggagatacctgacaactacatcgaatctctccctaaggta |
167 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| |||||||| |||||||| ||||| | ||| || ||||| || ||||||||| |
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| T |
3549364 |
caagtacttaaagcagcaatggctataaatgctcaaactctatcagaaatggagattcctgaaagctatattgaatccctacctaaggta |
3549453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 4071998 - 4071963
Alignment:
| Q |
209 |
taatataagcacttgtgagaccgtttgagagagctt |
244 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
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|
| T |
4071998 |
taatataagcacttgtgagactgtttgagagagctt |
4071963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 3024746 - 3024712
Alignment:
| Q |
213 |
ataagcacttgtgagaccgtttgagagagcttttt |
247 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
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|
| T |
3024746 |
ataagcacttgtgagactgtttgagagagcttttt |
3024712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 892 - 946
Target Start/End: Original strand, 30421619 - 30421673
Alignment:
| Q |
892 |
tatttaaacacaagttataatatgtaactctaagtttgaataagagaaaatcact |
946 |
Q |
| |
|
|||||||||||| ||| |||| ||||||| |||| |||||||| ||||||||||| |
|
|
| T |
30421619 |
tatttaaacacatgttgtaatctgtaactttaagcttgaataatagaaaatcact |
30421673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 892 - 957
Target Start/End: Original strand, 1273523 - 1273586
Alignment:
| Q |
892 |
tatttaaacacaagttataatatgtaactctaagtttgaataagagaaaatcactgctattactct |
957 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| |||| ||| ||||||||||||| || ||||| |
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|
| T |
1273523 |
tatttaaacacaagttgtaat--gtaactctaagcttgactaatagaaaatcactgcaatcactct |
1273586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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