View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868-Insertion-8 (Length: 990)
Name: NF4868-Insertion-8
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868-Insertion-8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 346 - 990
Target Start/End: Complemental strand, 33903089 - 33902436
Alignment:
| Q |
346 |
acaaggattgctctattgctgaaggaggattcagagttttgtgattgagatgttaccaaatatgaaccgtcgttggaggtggtggaaagaagctgtgaga |
445 |
Q |
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| T |
33903089 |
acaaggattgctctattgctgaaggaggattcagagttttgtgattgagatgttaccaaatctgaaccgtcgttggaggtggtggaaagaagctgtgaga |
33902990 |
T |
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| Q |
446 |
tggtggctggtgttgaatctgaacgtgtggaacggagaacaaagagccatgacatgatgaaaaataatgttgttgttgtgaaaaagaaccataaggattt |
545 |
Q |
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| T |
33902989 |
tggtggctggtgttgaatctgaacgtgtggaacggagaacaaagagccatgacatgatgaaaaataatgttgttgttgtgaaaaagaaccataaagattt |
33902890 |
T |
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| Q |
546 |
tcttgaaacaaccttaatggcagaagtatttttctctgccattgtaattgcatcccaattgtatcactttgttatatgaaatataataaaaacaatcaag |
645 |
Q |
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| T |
33902889 |
tcttgaaacaaccttaatggcagaagtatttttctctgccattgtaattgcatcccaattgtatcactttgttatatgaaatataataaaaacaatcaag |
33902790 |
T |
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| Q |
646 |
atcgttgttatctcatccgcttttgatcacgttctagatgttcagtccttagcgtcattcnnnnnnngataatagatgtcccgtcatgaatgtgagaaat |
745 |
Q |
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| T |
33902789 |
atcgttgttatctgatccacttttgatcacgttccagatgttcagtccttagcgtcattc-aaaaaagataatagatgtcccgtcatgaacgtgagaaat |
33902691 |
T |
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| Q |
746 |
gtggaccatggtgtacattgaaaagttaga-----------gaaaaagaaaatggataatgaagaattgaaatgtgtgagactgtgtgggaattggagag |
834 |
Q |
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| T |
33902690 |
gtggaccatggtgtgcattgaaaagttagagaaaaagaattgaaaaagaaaatggataatgaagaattgaaatgtgtgagacagtgt-ggaattggagag |
33902592 |
T |
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| Q |
835 |
gaagaagaagaaagcgtgagaatagggtctaatgaggaaacgttctattctctcgatggttttgagtcaaatatcaatcgttagcattatttaaagatgt |
934 |
Q |
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| T |
33902591 |
gaagaagaagaaagcgtgagaatagggtctaatgaggaaacgttctattctctcaatggttttgagtcaaatatcaatcgttagcattatttaaagatgt |
33902492 |
T |
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| Q |
935 |
tattattgataaaaggtgtaacgtgacctcaatgatctcaaagtgatggtggatat |
990 |
Q |
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| T |
33902491 |
tattattgataaaaggtgtaacgtgacctcaatgatctcaaagtgatggtggatat |
33902436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 33903427 - 33903154
Alignment:
| Q |
8 |
cggtcgagtttctaactctggttacaattctagcaggataaatttctggcaattctgaagcaagaatatctaatgtaagccaatattcaatactgtgttg |
107 |
Q |
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| T |
33903427 |
cggtcgagtttctaactctggttacaattctagcaggataaatttctggcaattctgaagcaagaatatctaatgtaagccaatattcaatactgtgttg |
33903328 |
T |
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| Q |
108 |
taaattcaaaccaccagggtaatgtggtatcttggttttcatatcaggccaaacgtttttcgccttttcatcgcctttccaatctaataacccgaaatga |
207 |
Q |
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| T |
33903327 |
taaattcaaaccaccagggtaatgtggtatcttggttttcatatcaggccaaacgtttttcgtcttttcatcgcctttccaatctaataacccgaaatga |
33903228 |
T |
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| Q |
208 |
aactcgggaggtagatcatacatgaaaactttcaaaacagcgttgcttttattgttattgctcttggtgtcgtt |
281 |
Q |
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| T |
33903227 |
aactcgggaggtaaatcatacatgaaaactttcaaaacagcgttgcttttattgttattgctcttggtgtcgtt |
33903154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 9327790 - 9327859
Alignment:
| Q |
60 |
ttctgaagcaagaatatctaatgtaagccaatattcaatactgtgttgtaaattcaaaccaccagggtaa |
129 |
Q |
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|||||| |||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||| ||||||||| |
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| T |
9327790 |
ttctgaggcaagaatgtctaatgtaagccaaaattctatactatgttgcaaattcaaacctccagggtaa |
9327859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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