View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868_high_1 (Length: 787)
Name: NF4868_high_1
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 125 - 504
Target Start/End: Complemental strand, 52002381 - 52002002
Alignment:
| Q |
125 |
gcatccatcaaactaattaaatattttaacacattgtagtagattttgatcaaccaatttagcgcgggaaaacaagaataagaaacagaaaatggaccca |
224 |
Q |
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| T |
52002381 |
gcatccatcaaactaattaaatattttaacacattgtagtagattttgatcaaccaatttagcgcgggaaaacaagaataagaaacagaaaatggaccca |
52002282 |
T |
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| Q |
225 |
cccaatcccaacgatgcccctcccattgaggatataacttctatcacagaacaactaaagggccacggtttttccaacaaagaaattggtgcaatcctta |
324 |
Q |
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| T |
52002281 |
cccaatcccaacgatgtccctcccattgaggatataacttctatcacagaacaactaaagggccacggtttttccaacaaagaaattggtgcaatcctta |
52002182 |
T |
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| Q |
325 |
ccttatccccatcaacatatgttcctgaatctcccaatcatattcatagagatgaaagaccacatgaaccctttctcaagagaggaactgaacccgactc |
424 |
Q |
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| T |
52002181 |
ccttagccccatcaacatatgttcctgaatctcccaatcatattcatagagatgaaagaccacatgaaccctttctcaagagaggaacggaacccgactc |
52002082 |
T |
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| Q |
425 |
cgatgatgcctcttcttctaaacgcacaaaactctacaactttgaaaacacttccgatccaaaaggaaagaaaccactca |
504 |
Q |
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| T |
52002081 |
cgatgatgcctcttcttctaaacgcacaaaactctacaactttgaaaacacttctgatccaaaaggaaagaaaccactca |
52002002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 536 - 781
Target Start/End: Complemental strand, 52002003 - 52001758
Alignment:
| Q |
536 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
635 |
Q |
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| T |
52002003 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaactacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
52001904 |
T |
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| Q |
636 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
735 |
Q |
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| T |
52001903 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
52001804 |
T |
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| Q |
736 |
cacgcattcatagtgtttcagagaataaagaaaaagatgatgatgt |
781 |
Q |
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| T |
52001803 |
cacgcattcatagtgtttcagagaataaagaaaaagatgatgatgt |
52001758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 52002475 - 52002405
Alignment:
| Q |
20 |
ttttgaaccatatgatagatagcaaggtcatatgttcgattttgtcgttcaatgtcataataaatagttgg |
90 |
Q |
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| T |
52002475 |
ttttgaaccatatgatagatagtaaggtcatatgtacgattttgttgttcaatgtcataataaatagttgg |
52002405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 643
Target Start/End: Complemental strand, 52011878 - 52011785
Alignment:
| Q |
550 |
atcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgatgatagcga |
643 |
Q |
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| T |
52011878 |
atcagaggaaggaaataacagaaaatcaaatatcactggatttggatattaatgactatatcattaccaatgaaactgaaactaatgatagcga |
52011785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 52012216 - 52012165
Alignment:
| Q |
263 |
ttctatcacagaacaactaaagggccacggtttttccaacaaagaaattggt |
314 |
Q |
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| T |
52012216 |
ttctgtcacaaaacaactcaagggtcacggtttttccgacaaagaaattggt |
52012165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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