View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4868_high_16 (Length: 251)
Name: NF4868_high_16
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868_high_16 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 13069994 - 13069756
Alignment:
| Q |
13 |
aaaataaaacaatatagtaaaatattcaatgaaatatcattnnnnnnnntgaaactctcaatttcgggttaaggtggtatatctaccttctaagggtgcc |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13069994 |
aaaaaaaaacaatatagtaaaatattcaatgaaatatcattaaaaaaaatgaaactctcaatttcgggttaaggtggtatatctaccttctaagggtgcc |
13069895 |
T |
|
| Q |
113 |
aagacctctattccccatggtaagaccatcaagaggtacttgttcaattgcttcacataatttctcacgagcatctccccaatagacctttactagtacc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13069894 |
aagacctctattccccatggtaagaccatcaagaggtacttgttcaattgcttcacataatttctcacgagcatctccccaatagacctttactagtacc |
13069795 |
T |
|
| Q |
213 |
acaacctatgccacacaaaatctcaaagttactaaaata |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13069794 |
acaacctatgccacacaaaatctcaaagttactaaaata |
13069756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University