View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868_high_2 (Length: 548)
Name: NF4868_high_2
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 10 - 533
Target Start/End: Complemental strand, 48767368 - 48766830
Alignment:
| Q |
10 |
aagaatatacaggaaacagatcaaaactcgtcatgatcctgttaaatagagttgttgtatcagtatcacatacataatttgtagctaggaaaaatttgta |
109 |
Q |
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| T |
48767368 |
aagaatatacaggaaacagatcaaaactcgtcatgatcctgttaaatagagttgttgtatcagtatcacatacataatttgtagctaggaaaaatttgta |
48767269 |
T |
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| Q |
110 |
gctagtaattattactgctacatctaaacatggttccttgtcgtcatttgttgttcttagggttagttattttagtctaacgcaatataaacttaattat |
209 |
Q |
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| T |
48767268 |
gctagtaattactactgctacatctaaacatggttccttgtcgtcatttgttgttcttagggttagttattttagtctaacgcaatataaactgaattat |
48767169 |
T |
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| Q |
210 |
ggcttgtatatgagtaattatgagaaat-------------tatgttcacttgcaaattgcaactttaaaccgatcaacacaattatgtgccgaaacttg |
296 |
Q |
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| T |
48767168 |
ggcttgtatatgagtaattatgagaaatatgcattgatgtatttgttcacttgcaaattgcaactttaaaccgatcaacacaattatgtgccgaaacttg |
48767069 |
T |
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| Q |
297 |
tcatgaacaaaggttcggattggtaaaaagtagctgatgatagataaactctattaagaatgtgttgcttaacattttacagaattctttctttatatga |
396 |
Q |
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| T |
48767068 |
tcatgaacaaaggttcggattggtaaaaagtagcggatgatagataaactctattaagaatgtgttgcttaacattttacagaattctttctttatatga |
48766969 |
T |
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| Q |
397 |
aaatttgatggcgaggagattgaaaacttgatttaagctttgtctaaagtttaaagcaaactgaat--caaccattgagagttttggaacaagctaaatt |
494 |
Q |
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| T |
48766968 |
aaatttgatggcgaggagattgaaaacttgatttaagctttgtctaaagtttaaagcaaactgaatcacaaccattgagagttttggaacaagctaaatt |
48766869 |
T |
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| Q |
495 |
ctcaaataagtgtatttctcattcaatcgtgtataaact |
533 |
Q |
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| T |
48766868 |
ctcaaataagtgtatttctcattcaatcgtgtataaact |
48766830 |
T |
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