View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868_high_3 (Length: 543)
Name: NF4868_high_3
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 4 - 495
Target Start/End: Original strand, 43339882 - 43340377
Alignment:
| Q |
4 |
gagcttgatttttaattggttgggagtgggggctgaaggtttgagatggtgatgtagtaaacaactttcattaattcaatccaatttgcaaaggtaagaa |
103 |
Q |
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| T |
43339882 |
gagcttgatttttaattggttgggagtgggggctgaaggtttgggatggtgatgtagtaaacaactttcattaattcaatccaatttgcaaaggtaagaa |
43339981 |
T |
|
| Q |
104 |
aagtnnnnnnngtatcgcatttattgtggttaacaacggcttggtgcatgtggttggagcgaaataatgttatttttaacaggaaggttgcaaattattt |
203 |
Q |
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| T |
43339982 |
aagtaaaaaaagtatcgcatttagtgtggttaacaacggcttggtgcatgtggttggagcgaaataatgttatttttaacaggaaggttgcaaattattt |
43340081 |
T |
|
| Q |
204 |
agaggtggttgaccatatcagaagcctatcttggtcttggtttatgtgtaggg----agggattgaacacaaactttcgatggtccgattggtggttgaa |
299 |
Q |
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| T |
43340082 |
agaggtggttgaccatatcaagagcctatcttggtcttggtttatgtgtagggagggagggattgaacacaaactttcgatggtccgattggtggttgaa |
43340181 |
T |
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| Q |
300 |
tccacttgtttgtatccgtggtatatgatcgtcgactgcttttgatgttggtagtggctggttctgttttgctcatatcagttcttgtgcgtatgtagtg |
399 |
Q |
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| T |
43340182 |
tccacttgtttgtatccgtggtatatgatcgtcgactgcttttgatgttggtagtggctggttctgttttgctcatatcagttcttgtgcgtatgtagtg |
43340281 |
T |
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| Q |
400 |
ttcgcagggagctgaactgaagtgttgtggggcggtttatgtgctcatatgatcagtgtttgcttgtaaggctggttctttgattacattagtatg |
495 |
Q |
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| T |
43340282 |
ttcgcagggagctgaactgaagtgttgtggggcggtttatgtgctcatatgatcagtgtttgcttttaaggctggttctttgattacattagtatg |
43340377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 4 - 449
Target Start/End: Complemental strand, 1015009 - 1014565
Alignment:
| Q |
4 |
gagcttgatttttaattggttgggagtgggggctgaaggtttgagatggtgatgtagtaaacaactttcattaattcaatccaatttgcaaaggtaagaa |
103 |
Q |
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||||||||||| |||||| |||||||||| ||||||||||| | ||| || |||||| ||||||||| | || ||||||| |||||||| | |||||||| |
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| T |
1015009 |
gagcttgatttgtaattgattgggagtggaggctgaaggttgg-gattgttatgtagcaaacaacttccttttattcaattcaatttgcgagggtaagaa |
1014911 |
T |
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| Q |
104 |
aagtnnnnnnngtatcgcatttattgtggttaacaacggcttggtgcatgtggttggagcgaaataatgttatttttaacaggaaggttgcaaattattt |
203 |
Q |
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| T |
1014910 |
aggtaaaaaaagtatcgcatttagtgtggctaacaacagcttggtgtatttggttggagcgttataatgttctttttaaatggtaggttgtgaattgttt |
1014811 |
T |
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| Q |
204 |
agaggtggttgaccatatcagaagcctatcttggtcttggtttatgtgtagggagggattgaacacaaactttcgatggtccgattggtggttgaatcca |
303 |
Q |
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| T |
1014810 |
agaggtggttgatcctatcaaacacctatcttggtcttggtttatgtgtagggaggggttcaacacgaactttcgatgatcctattggtggttgaatcca |
1014711 |
T |
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| Q |
304 |
cttgtttgtatccgtggtatatgatcgtcgactgcttttgatgttggtagtggctggttctgttttgctcatatcagttcttgtgcgtatgtagtgttcg |
403 |
Q |
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| T |
1014710 |
cttgtttgtatctgaagtatttgaacgtcgccttcttgcaatgtttgtagtggctctttctattttactcgtatcagtttctgtgcgggtctggtgtttg |
1014611 |
T |
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| Q |
404 |
cagggagctgaactgaagtgttgtggggcggtttatgtgctcatat |
449 |
Q |
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| T |
1014610 |
cagggagctgaactgaagggttgtggggctggttctgtgctcatat |
1014565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 8726591 - 8726691
Alignment:
| Q |
115 |
gtatcgcatttattgtggttaacaacggcttggtgcatgtggttggagcgaaataatgttatttttaacaggaaggttgcaaattatttagaggtggttg |
214 |
Q |
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| T |
8726591 |
gtatcacatttagtgtggttgataacggcttcatgcatttggttgggacgaaacaacattctttttaacaggaaggtggccaattgcttggaggtggttg |
8726690 |
T |
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| Q |
215 |
a |
215 |
Q |
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| T |
8726691 |
a |
8726691 |
T |
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