View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868_high_4 (Length: 508)
Name: NF4868_high_4
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 9 - 408
Target Start/End: Original strand, 41125979 - 41126378
Alignment:
| Q |
9 |
agaatatagagagtaatcaaagcatttttcacagttttctgaaagcttttcctcggcttttgaagcttgatccatcttttatccttcgacaacaacgata |
108 |
Q |
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| T |
41125979 |
agaaaatagagagtaatcaaagcatttttcacagttttctgaaagcttttcctcggcttttgaagcttgatccatcttttatccttcgacaacaacgata |
41126078 |
T |
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| Q |
109 |
cctcaggtttcaaaccagttagatcaaacttccatgcagtaacctccatgaaaatcgtctgcaacccattgtcagcagatccatgcaaaaatatcttcaa |
208 |
Q |
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| T |
41126079 |
cctcaggtttcaaaccagttagatcaaacttccatgcagtaacctccatgaaaattgtctgcaacccattgtcagcagatccatgcaaaaatatcttcaa |
41126178 |
T |
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| Q |
209 |
ccccttttcggtatcatcaactttggaaaccttagaagcgccccatttaaacggtagaacagagaaacacacgggttcgccatcgttatcttcgagatga |
308 |
Q |
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| T |
41126179 |
ccccttttcggtatcatcaactttggaaaccttagaagcgccccatttaaacggtagaacagagaaacacacgggttcgccatcgttatcttcgagatga |
41126278 |
T |
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| Q |
309 |
taattggttacatacaaagactgaaactcgatttcagattcagtttcatcccttaatgtcgtgaatttccttttcatctcaataaagcgttgttctctac |
408 |
Q |
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| T |
41126279 |
taattggttacatacaaagactgaaactcgatttcagattcagtttcatcccttaatgtcgtgaatttccttttcatctcaataaagcgttgttctctac |
41126378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 41126427 - 41126478
Alignment:
| Q |
457 |
cggagataagtagaaccctaatttctaaaataggaaccagctgaataatgta |
508 |
Q |
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| T |
41126427 |
cggagataagtagaaccctaatttctaaaataggaaccagctgaataatgta |
41126478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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