View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868_high_5 (Length: 495)
Name: NF4868_high_5
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 35410036 - 35410508
Alignment:
| Q |
1 |
cgcataaggataatcttcaataagtagtctaatgccatgtggctgagtggcatctggaaccgccaaacctctgnnnnnnnngaaagaataaatagttaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35410036 |
cgcataaggataatcttcaataagtagtctaatgccatgtggccgagtggcatctggaaccgccaaacctctgaaaaaaa-gaaagaataaatagttaga |
35410134 |
T |
|
| Q |
101 |
tcttatcttcttcacttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgcacagaaaactttgatgaaggaaactatcttctttacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35410135 |
tcttatcttcttcacttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgagcagaaaactttgatgaaggaaactatcttctttacctt |
35410234 |
T |
|
| Q |
201 |
cttttaagatcggcaggaagaccttccatgtcaaatcgccaccaatctttataggcagcacacgtaatttgcatacagtatctcccgggagtgtagtttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410235 |
cttttaagatcggcaggaagaccttccatgtcaaaccgccaccaatctttataggcagcacacgtaatttgcatacagtatctcccgggagtgtagtttt |
35410334 |
T |
|
| Q |
301 |
tctctatggaaccgtctgcattaacgagtacctcgcgggctgttgcatttgtcttgagtgtgtatcgcatatggggatgcagaagcttgaatacaggatg |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410335 |
tctctatggaaccgtctgcattaacgagtacctcgcgggctgttgcatttgtcttgagtgtgtatcgcatatggggatgcagaagcttgaatacaggatg |
35410434 |
T |
|
| Q |
401 |
catcacgcttaattgccgatgagctgcaattattaatggttccatgcatgcgtgtattcttaacctgttcggtt |
474 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410435 |
catcacgcttaattgccgatgagctgcaattattaatggttccatgcatgcgtgtattcttaacctgttcggtt |
35410508 |
T |
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