View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4868_high_9 (Length: 320)

Name: NF4868_high_9
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4868_high_9
NF4868_high_9
[»] chr8 (1 HSPs)
chr8 (11-320)||(45427108-45427418)


Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 45427418 - 45427108
Alignment:
Q  11 atcatcaagttgattaatctatcgttttatgggtgtaggtaagtgagagagacaaagtcttattttacctgtaagcccagtttattgagaagctcgtgaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45427418 atcatcaagttgattaatctatcgttttatgggtgtaggtaagtgagagagacaaagtcttattttacctgtaagcccagtttattgagaagctcgtgaa 45427319  T
Q  111 ccctcttcnnnnnnncgtccctggaaatagaaggaggaagcctaacttcagcagcaaacataaatgtttcgaaaactgtcaacatagggaaaagctggtc 210  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45427318 ccctcttctttttttcgtccctggaaatagaaggaggaagcctaacttcagcagcaaacataaatgtttcgaaaactgtcaacatagggaaaagctggtc 45427219  T
Q  211 atcttgcatcacataggatgacaccattttcatgtagcttgtagttacctgcataattagagactacctcaatgacaattc-ttaagtttcaaagaaagg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||| ||||| |||| ||| |||||||||    
T  45427218 atcttgcatcacataggatgacaccattttcatgtagcttgtagttacctgcataattagagcatacctacatgagaattcgttaaatttgaaagaaagg 45427119  T
Q  310 tgaaaaatatt 320  Q
    |||||||||||    
T  45427118 tgaaaaatatt 45427108  T

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