View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4868_low_10 (Length: 331)

Name: NF4868_low_10
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4868_low_10
NF4868_low_10
[»] chr2 (2 HSPs)
chr2 (1-158)||(16384814-16384969)
chr2 (165-316)||(16385119-16385270)
[»] chr4 (1 HSPs)
chr4 (141-224)||(8321554-8321636)
[»] chr1 (3 HSPs)
chr1 (90-195)||(26330435-26330541)
chr1 (144-216)||(17622013-17622085)
chr1 (145-222)||(26645958-26646035)
[»] scaffold0021 (1 HSPs)
scaffold0021 (119-222)||(156500-156604)
[»] chr3 (1 HSPs)
chr3 (113-217)||(21806652-21806757)
[»] chr7 (1 HSPs)
chr7 (83-170)||(5487433-5487520)
[»] chr5 (1 HSPs)
chr5 (148-222)||(33699845-33699919)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 16384814 - 16384969
Alignment:
Q  1 tgcacaaacatgtaccaccaacacaatctagtaagccagtgtacgaaatcgaaacctaaaaattgtgagacatttttcaaattggttctttgagataccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  16384814 tgcacaaacatgtaccaccaacacaatctagtaagccagt--acgaaatcgaaacctacaaattgtgacacatttttcaacttggttctttgagataccc 16384911  T
Q  101 tctcaacctctacactcttttctcttcttttattggtctattgaccatacaagttttg 158  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  16384912 tctcaacctctacactcttttctcttcttttattgctctattaaccatacaagttttg 16384969  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 165 - 316
Target Start/End: Original strand, 16385119 - 16385270
Alignment:
Q  165 ctcttcggactttagctatcacacaatccacttttataacctaaagatgattaatgaaacatagaaagtgaaaatccagacagcaacacataaaatagat 264  Q
    ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  16385119 ctcttcggactttagttatcacacaatctacttttataacctaacgatgattaatgaaacatagaaagcgaaaatccagaaagcaacacataaaatagat 16385218  T
Q  265 cgtgaaacaacacgattataagccatactacttgtaaagcaagcacctaact 316  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  16385219 cgtgaatcaacacgattataagccatactgcttgtaaagcaagcacctaact 16385270  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 8321554 - 8321636
Alignment:
Q  141 ttgaccatacaagttttggaaagcctcttcggactttagctatcacacaatccacttttataacctaaagatgattaatgaaac 224  Q
    |||||| ||||||||||||| | ||||||  |||||||||||||| ||||||||| ||||| |||||||||| |||||||||||    
T  8321554 ttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttat-acctaaagataattaatgaaac 8321636  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 26330435 - 26330541
Alignment:
Q  90 ttgagataccctctcaacctctacactcttttctcttcttttattggtcta-ttgaccatacaagttttggaaagcctcttcggactttagctatcacac 188  Q
    |||||||||||||||||   |||||||||| ||||||||||| | ||| || |||| | ||||||||||||| | ||||||| ||||||| | | |||||    
T  26330435 ttgagataccctctcaaatactacactcttctctcttcttttctcggtttatttgatcttacaagttttggacaacctcttcagactttaacaaccacac 26330534  T
Q  189 aatccac 195  Q
    |||||||    
T  26330535 aatccac 26330541  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 17622085 - 17622013
Alignment:
Q  144 accatacaagttttggaaagcctcttcggactttagctatcacacaatccacttttataacctaaagatgatt 216  Q
    |||||||||||||||   ||||| |||||||||||| || |||||||||||| |||||| | |||||| ||||    
T  17622085 accatacaagttttgagcagccttttcggactttagttaccacacaatccacctttatagcataaagaggatt 17622013  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 26646035 - 26645958
Alignment:
Q  145 ccatacaagttttggaaagcctcttcggactttagctatcacacaatccacttttataacctaaagatgattaatgaa 222  Q
    ||||||||||||| || |  |||||| ||||||| ||| |||||||||||| ||||||||  ||||| ||||| ||||    
T  26646035 ccatacaagttttagacatgctcttcagactttaactaccacacaatccacctttataactcaaagaagattagtgaa 26645958  T

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Target: scaffold0021 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 156604 - 156500
Alignment:
Q  119 tttctcttcttttattggtcta-ttgaccatacaagttttggaaagcctcttcggacttta-gctatcacacaatccacttttataacctaaagatgatt 216  Q
    ||||||||||||| | |||||| || |||||| |||||||||| ||||| ||| ||||||| |||| || |||||| || ||||||||||||| | ||||    
T  156604 tttctcttcttttct-ggtctacttaaccatataagttttggacagcctattcagactttaagctaccatacaatcaacctttataacctaaaaaggatt 156506  T
Q  217 aatgaa 222  Q
    ||||||    
T  156505 aatgaa 156500  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 21806757 - 21806652
Alignment:
Q  113 cactcttttctcttcttttattggtcta-ttgaccatacaagttttggaaagcctcttcggactttagctatcacacaatccacttttataacctaaaga 211  Q
    |||| ||||||||||||||  ||||| | ||  ||| |||||||||||| || ||||||  |||||||||| ||||| |||||| |||||| ||||||||    
T  21806757 cactattttctcttctttttatggtccactttgccacacaagttttggacagtctcttcaaactttagctaccacacgatccacctttataccctaaaga 21806658  T
Q  212 tgatta 217  Q
     |||||    
T  21806657 agatta 21806652  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 5487520 - 5487433
Alignment:
Q  83 tggttctttgagataccctctcaacctctacactcttttctcttcttttattggtcta-ttgaccatacaagttttggaaagcctcttc 170  Q
    |||| ||||||||||||| |||||| ||| |||| |||||||||||||| |||| ||| ||||| |||| ||||||||| | |||||||    
T  5487520 tggtgctttgagatacccactcaacttctgcact-ttttctcttcttttcttggcctacttgacaatacgagttttggacaacctcttc 5487433  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 33699845 - 33699919
Alignment:
Q  148 tacaagttttggaaagcctcttcggactttagctatcacacaatccacttttataacctaaagatgattaatgaa 222  Q
    ||||| ||||||  ||||||||| ||||||||||   ||||||||||| |||||| |||||||| ||||| ||||    
T  33699845 tacaaattttgggcagcctcttcagactttagctgctacacaatccacctttataccctaaagaggattagtgaa 33699919  T

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