View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868_low_13 (Length: 311)
Name: NF4868_low_13
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 3300824 - 3301124
Alignment:
| Q |
13 |
aatatcctgccaaaggttcaaaatgatttatgacaataatagataattagtaaatggaaaataattttataaagtttgacctacttacagaaataattga |
112 |
Q |
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| T |
3300824 |
aatatcctgccaaaggttcaaaatgatttatgacaataatagataattagtaaatggaaaataatttcataaagtttgacctacttacagaaataattga |
3300923 |
T |
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| Q |
113 |
aacaaaattggtccccctttgctaaagatcgtgtagcagcatccggacagaaagacacatca----------------gtggcaaataataacatcatca |
196 |
Q |
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| T |
3300924 |
atcaaaattggtccccctttgctaaagatcgtgtagcagcatccggacagaaagacacatcagtttgagaatcagacggtggcaaataataacatcatca |
3301023 |
T |
|
| Q |
197 |
ctagaaaagaagaaagaatgtaaccaacttgaatagtaagaccatctcccaaaggagcagagtatggatcacttttggaacgttcaccgatgtgtttttt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
3301024 |
ctagaaaagaagaaagaatgtaaccaacttgaatagtaagaccatctcccaaaggagcagagtatggagcacttttggaacgttcactgatgtgtttttt |
3301123 |
T |
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| Q |
297 |
g |
297 |
Q |
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| T |
3301124 |
g |
3301124 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 41387382 - 41387314
Alignment:
| Q |
101 |
agaaataattgaaacaaaattggtccccctttgctaaagatcgtgtagcagcatcc-ggacagaaagaca |
169 |
Q |
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||||||||||||| |||||||| |||||| ||||||||| ||||||||||||| || | ||||||||||| |
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| T |
41387382 |
agaaataattgaatcaaaattgctccccc-ttgctaaagctcgtgtagcagcagcctgaacagaaagaca |
41387314 |
T |
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