View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868_low_19 (Length: 249)
Name: NF4868_low_19
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868_low_19 |
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| [»] chr7 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 23862968 - 23862726
Alignment:
| Q |
7 |
gttgaagtgatgatgatcaatatatggttgaagacattaataccattaatcatttgtacgtttttaatagtagatgaatggatgaaagttattgcatagt |
106 |
Q |
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| T |
23862968 |
gttgaagcgatgatgatcaatatagggttgaagacattaatacgattaatcatttgtacgtttttaatagtagatgaatggatgaaagttattgcatagt |
23862869 |
T |
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| Q |
107 |
gaagacattactaatgataaatcctagatatagagataacttgatatacaagttatcagttagttacatttgcctaactgaattagagtgattgttagca |
206 |
Q |
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| T |
23862868 |
gaagacattagtgatgataaatcctagatatagagataacttgatatacaagttatcagttagttacatttgcctaactgaattagagtgattgttagta |
23862769 |
T |
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| Q |
207 |
tatagttagtgtagcatagttcctatagtatttcacttctcct |
249 |
Q |
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| T |
23862768 |
tatagttagtgtagcatagttcctatagtatttcacctctcct |
23862726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 18473871 - 18474017
Alignment:
| Q |
96 |
tattgcatagtgaagacattactaatgataaatcctagatatagagataacttgatatacaagttatcagttagttaca-tttgcctaactgaattagag |
194 |
Q |
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| T |
18473871 |
tattgcatagtgaagagattagtgataataaataatagttatagagataacttgttatacaagtgatcagttagttacactttacataattgtattagga |
18473970 |
T |
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| Q |
195 |
tgattgttagcatatagttagtgtagcatagttcctatagtatttca |
241 |
Q |
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| T |
18473971 |
ttattgttagaatacagttagtataggatagttgctatagtatttca |
18474017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 18478441 - 18478587
Alignment:
| Q |
96 |
tattgcatagtgaagacattactaatgataaatcctagatatagagataacttgatatacaagttatcagttagttaca-tttgcctaactgaattagag |
194 |
Q |
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| T |
18478441 |
tattgcatagtgaaaatattagtgataataaatcttagttataaagataacttgcaatacaagttatcagttagttacactttacataattattttaggg |
18478540 |
T |
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| Q |
195 |
tgattgttagcatatagttagtgtagcatagttcctatagtatttca |
241 |
Q |
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| T |
18478541 |
ttattcttagaatacggttagtgtaggatagttgctatagtatttca |
18478587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 96 - 249
Target Start/End: Complemental strand, 35268204 - 35268051
Alignment:
| Q |
96 |
tattgcatagtgaagacattactaatgataaatcctagatatagagataacttgatatacaagttatcagttagttacatttgcctaactgaattagagt |
195 |
Q |
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||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
35268204 |
tattgcatagttaagacattagtgatgataaatcctagatatagagataacttgatatacaagttatcagttagttacatttacctaactgtattagagt |
35268105 |
T |
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| Q |
196 |
gattgttagcatatagttagtgtagcatagttcctatagtatttcacttctcct |
249 |
Q |
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| T |
35268104 |
gtttgttaatatacagttagtgtagcatagttcctattgtatttcacttctcct |
35268051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 96 - 249
Target Start/End: Complemental strand, 35571798 - 35571648
Alignment:
| Q |
96 |
tattgcatagtgaagacattactaatgataaatcctagatatagagataacttgatatacaagttatcagttagttacatttgcctaactgaattagagt |
195 |
Q |
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||||||||| ||||||||||| | || |||||||||||||||| ||||||| || ||||| ||||||||||||||||||| |||||||| |||||||| |
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| T |
35571798 |
tattgcataatgaagacattagtgataataaatcctagatatatagataacctg---tacaaattatcagttagttacatttacctaactgtattagagt |
35571702 |
T |
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| Q |
196 |
gattgttagcatatagttagtgtagcatagttcctatagtatttcacttctcct |
249 |
Q |
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| T |
35571701 |
gattgttagcatatagttagtgtagcatagttcctatagtatttcacctctcct |
35571648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 241
Target Start/End: Complemental strand, 9801606 - 9801460
Alignment:
| Q |
96 |
tattgcatagtgaagacattactaatgataaatcctagatatagagataacttgatatacaagttatcagttagttacat-ttgcctaactgaattagag |
194 |
Q |
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|||||||||||||||| || | | || | ||||| ||| |||||||||||||| ||| ||||||||||||||||||| | || | |||||| ||||| |
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| T |
9801606 |
tattgcatagtgaagagatcagtgataacaaatcatagtcatagagataacttgctatgcaagttatcagttagttacttcttacataactgtattagga |
9801507 |
T |
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| Q |
195 |
tgattgttagcatatagttagtgtagcatagttcctatagtatttca |
241 |
Q |
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|||||||| ||| ||||||| ||| ||||| ||||||||||||| |
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| T |
9801506 |
atattgttagaatacagttagtataggttagttactatagtatttca |
9801460 |
T |
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