View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4868_low_24 (Length: 238)

Name: NF4868_low_24
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4868_low_24
NF4868_low_24
[»] chr5 (11 HSPs)
chr5 (1-160)||(41126624-41126783)
chr5 (161-210)||(2485141-2485190)
chr5 (159-209)||(8513461-8513511)
chr5 (161-209)||(7866525-7866573)
chr5 (160-210)||(19572667-19572717)
chr5 (161-210)||(35561932-35561981)
chr5 (161-209)||(5732035-5732083)
chr5 (161-209)||(6767166-6767214)
chr5 (161-209)||(9812816-9812864)
chr5 (161-209)||(12704958-12705006)
chr5 (161-209)||(12766075-12766123)
[»] chr6 (10 HSPs)
chr6 (161-217)||(15643935-15643991)
chr6 (161-209)||(5253338-5253386)
chr6 (161-210)||(2271415-2271464)
chr6 (161-210)||(3030732-3030781)
chr6 (161-210)||(13468880-13468929)
chr6 (161-210)||(21898595-21898644)
chr6 (161-202)||(21945236-21945277)
chr6 (161-209)||(8612089-8612137)
chr6 (161-209)||(9179851-9179899)
chr6 (161-209)||(29444880-29444928)
[»] chr8 (7 HSPs)
chr8 (161-210)||(14666185-14666234)
chr8 (161-210)||(2467232-2467281)
chr8 (161-202)||(2964023-2964064)
chr8 (161-210)||(10535517-10535566)
chr8 (161-210)||(22810027-22810076)
chr8 (161-209)||(34846761-34846809)
chr8 (161-209)||(38922529-38922577)
[»] chr3 (6 HSPs)
chr3 (161-210)||(42412889-42412938)
chr3 (164-215)||(6462358-6462409)
chr3 (161-210)||(25294903-25294952)
chr3 (161-209)||(15320129-15320177)
chr3 (161-209)||(32873664-32873712)
chr3 (161-209)||(47471775-47471823)
[»] chr1 (8 HSPs)
chr1 (161-210)||(8905265-8905314)
chr1 (161-209)||(15238222-15238270)
chr1 (160-210)||(31576662-31576712)
chr1 (161-210)||(2981046-2981095)
chr1 (161-202)||(25165346-25165387)
chr1 (161-210)||(40288592-40288641)
chr1 (161-210)||(41696712-41696761)
chr1 (161-210)||(46929852-46929901)
[»] scaffold0005 (2 HSPs)
scaffold0005 (161-209)||(250128-250176)
scaffold0005 (161-209)||(271189-271237)
[»] scaffold0002 (1 HSPs)
scaffold0002 (161-209)||(516-564)
[»] chr7 (12 HSPs)
chr7 (161-209)||(14650263-14650311)
chr7 (161-209)||(22993482-22993530)
chr7 (161-209)||(47341822-47341870)
chr7 (161-215)||(43346888-43346942)
chr7 (156-210)||(48804624-48804678)
chr7 (161-210)||(10047990-10048039)
chr7 (161-210)||(42210376-42210425)
chr7 (161-209)||(19914817-19914865)
chr7 (161-209)||(22268144-22268192)
chr7 (161-209)||(34127735-34127783)
chr7 (161-209)||(43925458-43925506)
chr7 (161-209)||(45447916-45447964)
[»] chr4 (12 HSPs)
chr4 (161-209)||(14567199-14567247)
chr4 (161-209)||(27531772-27531820)
chr4 (161-215)||(33647669-33647723)
chr4 (161-215)||(43458561-43458615)
chr4 (161-210)||(1446774-1446823)
chr4 (161-210)||(29895735-29895784)
chr4 (161-210)||(48317389-48317438)
chr4 (161-209)||(1940889-1940937)
chr4 (161-209)||(3574561-3574609)
chr4 (161-209)||(34667717-34667765)
chr4 (161-209)||(41339510-41339558)
chr4 (161-209)||(52950030-52950078)
[»] chr2 (11 HSPs)
chr2 (161-209)||(10026731-10026779)
chr2 (160-210)||(44193421-44193471)
chr2 (161-210)||(3644001-3644050)
chr2 (161-210)||(7747217-7747266)
chr2 (161-202)||(10046598-10046639)
chr2 (161-210)||(44548846-44548895)
chr2 (161-210)||(44773208-44773257)
chr2 (161-209)||(8410074-8410122)
chr2 (161-209)||(18902645-18902693)
chr2 (160-208)||(40969031-40969079)
chr2 (161-209)||(44945537-44945585)
[»] scaffold0376 (1 HSPs)
scaffold0376 (161-208)||(12616-12663)
[»] scaffold0316 (1 HSPs)
scaffold0316 (162-208)||(1730-1776)
[»] scaffold0006 (1 HSPs)
scaffold0006 (161-209)||(68463-68511)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 41126624 - 41126783
Alignment:
Q  1 tgatgaattttgtgttgttgtgaatttatagaaannnnnnngtggactatgtaaacgttctccgaatattttgccgctaaaagttagaggttaatttatt 100  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41126624 tgatgaattttgtgttgttgtgaatttatagaaatttttttgtggactatgtaaacgttctccgaatattttgccgctaaaagttagaggttaatttatt 41126723  T
Q  101 ttccattatgcaaattcacgtcattacaagatatatcaaaattaaagtaaaagattttag 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41126724 ttccattatgcaaattcacgtcattacaagatatatcaaaattaaagtaaaagatgttag 41126783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 2485141 - 2485190
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    |||||||||| |||||||| |||||||||||||||||||||| |||||||    
T  2485141 aaccaagttgtttggactccaatggcaaggagctcattccaaggacgtat 2485190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 8513461 - 8513511
Alignment:
Q  159 agaaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||||||||| | ||||||||||||| |||||| ||||||    
T  8513461 agaaccaagttgcttggactcaagtggcaaggagctccttccaaggacgta 8513511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 7866525 - 7866573
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||||||| | ||||||||||||| |||||| ||||||    
T  7866525 aaccaagttgcttggactccagtggcaaggagctccttccaaggacgta 7866573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 19572667 - 19572717
Alignment:
Q  160 gaaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    |||||||||||||||| ||| | ||||||||||||| |||||| |||||||    
T  19572667 gaaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtat 19572717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 35561981 - 35561932
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||||||| | |||||| |||||| |||||| |||||||    
T  35561981 aaccaagttgcttggactccagtggcaaagagctccttccaatgacgtat 35561932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 5732083 - 5732035
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| ||||||    
T  5732083 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgta 5732035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 6767214 - 6767166
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| ||||||    
T  6767214 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgta 6767166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 9812816 - 9812864
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  9812816 aaccaagttgtttggactccagtggcaaggagctccttccaaggacgta 9812864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 12704958 - 12705006
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  12704958 aaccaagttgtttggactccagtggcaaggagctccttccaaggacgta 12705006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 12766075 - 12766123
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  12766075 aaccaagttgtttggactcgagtggcaaggagctccttccaaggacgta 12766123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 15643991 - 15643935
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtatgtgggaa 217  Q
    ||||||||||||||| ||| | |||||||||||||||||||| ||||||| ||||||    
T  15643991 aaccaagttgcttgggctccagtggcaaggagctcattccaaggacgtatctgggaa 15643935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 5253386 - 5253338
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| ||||||||||||||| |||||| ||||||    
T  5253386 aaccaagttgcttgggctccaatggcaaggagctccttccaaggacgta 5253338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 2271464 - 2271415
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| |||||||    
T  2271464 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtat 2271415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 3030781 - 3030732
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    |||||||||| |||| ||| | |||||||||||||||||||| |||||||    
T  3030781 aaccaagttgtttgggctccagtggcaaggagctcattccaaggacgtat 3030732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 13468880 - 13468929
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||||  ||||||||||||| |||||| |||||||    
T  13468880 aaccaagttgcttgggctctggtggcaaggagctccttccaaggacgtat 13468929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 21898595 - 21898644
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| |||||||    
T  21898595 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtat 21898644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 21945236 - 21945277
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaa 202  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||    
T  21945236 aaccaagttgcttggactccaatggcaagcagctccttccaa 21945277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 8612137 - 8612089
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  8612137 aaccaagttgtttggactccagtggcaaggagctccttccaaggacgta 8612089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 9179899 - 9179851
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||| ||| | |||||||||||||||||||| ||||||    
T  9179899 aaccaagttgtttgggctccagtggcaaggagctcattccaaggacgta 9179851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 29444928 - 29444880
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||| ||||| ||||| ||||||||||||| |||||| ||||||    
T  29444928 aaccaagttacttgggctctagtggcaaggagctccttccaaagacgta 29444880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 14666234 - 14666185
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||| | |||||||||||||||||||| |||||||    
T  14666234 aaccaagttgcttgggctccagtggcaaggagctcattccaaggacgtat 14666185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 2467281 - 2467232
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| |||||||    
T  2467281 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtat 2467232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 2964023 - 2964064
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaa 202  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||    
T  2964023 aaccaagttgcttggactctagtggcaagtagctccttccaa 2964064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 10535566 - 10535517
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    |||||||||| |||||||| | ||||||||||||| |||||| |||||||    
T  10535566 aaccaagttgtttggactccagtggcaaggagctccttccaaggacgtat 10535517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 22810027 - 22810076
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    |||||||||| |||| ||||| ||||||||||||| |||||| |||||||    
T  22810027 aaccaagttgtttgggctctagtggcaaggagctccttccaaggacgtat 22810076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 34846761 - 34846809
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||| ||| | |||||||||||||||||||| ||||||    
T  34846761 aaccaagttgtttgggctccagtggcaaggagctcattccaaggacgta 34846809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 38922577 - 38922529
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| ||||||    
T  38922577 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgta 38922529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 42412938 - 42412889
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||| ||||||||||||||| |||||| |||||||    
T  42412938 aaccaagttgcttgggctccaatggcaaggagctccttccaaggacgtat 42412889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 6462358 - 6462409
Alignment:
Q  164 caagttgcttggactctaatggcaaggagctcattccaacgacgtatgtggg 215  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||||||| ||||    
T  6462358 caagttgcttgggctctagtggcaaggagctccttccaaggacgtatctggg 6462409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 25294903 - 25294952
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| |||||||    
T  25294903 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtat 25294952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 15320129 - 15320177
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  15320129 aaccaagttgtttggactccagtggcaaggagctccttccaaggacgta 15320177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 32873712 - 32873664
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||| ||| | |||||||||||||||||||| ||||||    
T  32873712 aaccaagttgtttgggctccagtggcaaggagctcattccaaggacgta 32873664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 47471775 - 47471823
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||||| |||||| |||||| |||||| ||||||    
T  47471775 aaccaagttgcttgggctctagtggcaaagagctccttccaaggacgta 47471823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 8905314 - 8905265
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    |||||||||| |||||||||| ||||||||||||| |||||| |||||||    
T  8905314 aaccaagttgtttggactctagtggcaaggagctccttccaatgacgtat 8905265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 15238270 - 15238222
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| ||||||||||||||| |||||| ||||||    
T  15238270 aaccaagttgcttgggctccaatggcaaggagctccttccaaggacgta 15238222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 31576712 - 31576662
Alignment:
Q  160 gaaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||| |||| ||||| ||||||||||||||||| || |||||||    
T  31576712 gaaccaagttgtttgggctctagtggcaaggagctcattctaaggacgtat 31576662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 2981095 - 2981046
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||||| ||||||||||||| |||||  |||||||    
T  2981095 aaccaagttgcttgggctctagtggcaaggagctccttccagggacgtat 2981046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 25165346 - 25165387
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaa 202  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||    
T  25165346 aaccaagttgcttgggctctagtggcaaggagctccttccaa 25165387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 40288641 - 40288592
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| |||||||    
T  40288641 aaccaagttgcttgggctcgagtggcaaggagctctttccaaggacgtat 40288592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 41696761 - 41696712
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||| ||||||| |||||| |||||| |||||| |||||||    
T  41696761 aaccaagttgcttagactctagtggcaatgagctccttccaaggacgtat 41696712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 46929901 - 46929852
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||||| ||||||| ||||| |||||| |||||||    
T  46929901 aaccaagttgcttgggctctagtggcaagaagctccttccaaagacgtat 46929852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 250176 - 250128
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| | |||||||||||||||||||| ||||||    
T  250176 aaccaagttgcttgggctccagtggcaaggagctcattccaaggacgta 250128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 271237 - 271189
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||||  ||||||||||||| |||||| ||||||    
T  271237 aaccaagttgcttgggctctggtggcaaggagctccttccaaggacgta 271189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 516 - 564
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||||| ||||||||||||| |||||| ||||||    
T  516 aaccaagttgcttgggctctagtggcaaggagctccttccaaggacgta 564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 14650263 - 14650311
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||||||||| ||||||||||||| |||||| ||||||    
T  14650263 aaccaagttgtttggactctagtggcaaggagctccttccaaggacgta 14650311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 22993530 - 22993482
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||||||| | ||||||||||||| |||||| ||||||    
T  22993530 aaccaagttgcttggactccagtggcaaggagctccttccaaggacgta 22993482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 47341822 - 47341870
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| | |||||||||||||||||||| ||||||    
T  47341822 aaccaagttgcttgggctccagtggcaaggagctcattccaaggacgta 47341870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 43346942 - 43346888
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtatgtggg 215  Q
    |||||||||| |||||||| | ||||||||||||| |||||| ||||||| ||||    
T  43346942 aaccaagttgtttggactccagtggcaaggagctccttccaaagacgtatctggg 43346888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 48804624 - 48804678
Alignment:
Q  156 tttagaaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    |||| ||||||||||||||| ||| | ||||||||||||| |||||| |||||||    
T  48804624 tttataaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtat 48804678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 10048039 - 10047990
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    |||||||||||||| |||| | ||||||||||||| |||||| |||||||    
T  10048039 aaccaagttgcttgaactccagtggcaaggagctccttccaaggacgtat 10047990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 42210425 - 42210376
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||| ||||| | ||||||||||||| |||||| |||||||    
T  42210425 aaccaagttgcttagactccagtggcaaggagctctttccaaggacgtat 42210376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 19914865 - 19914817
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| ||||||    
T  19914865 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgta 19914817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 22268192 - 22268144
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||| ||| | |||||||||||||||||||| ||||||    
T  22268192 aaccaagttgtttgggctccagtggcaaggagctcattccaaggacgta 22268144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 34127783 - 34127735
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| ||||||||||| ||| |||||| ||||||    
T  34127783 aaccaagttgcttgggctccaatggcaaggaactccttccaaggacgta 34127735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 43925458 - 43925506
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| ||||||    
T  43925458 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgta 43925506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 45447916 - 45447964
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||||||||  |||| ||||||||||||| |||||| ||||||    
T  45447916 aaccaagttgcttgggttctagtggcaaggagctccttccaaggacgta 45447964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 14567199 - 14567247
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| | |||||||||||||||||||| ||||||    
T  14567199 aaccaagttgcttgggctccagtggcaaggagctcattccaaggacgta 14567247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 27531820 - 27531772
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||||||| | ||||||||||||| |||||| ||||||    
T  27531820 aaccaagttgcttggactccagtggcaaggagctccttccaaggacgta 27531772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 33647669 - 33647723
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtatgtggg 215  Q
    ||||||||||||||| ||||| ||||||||||||| || ||| ||||||| ||||    
T  33647669 aaccaagttgcttgggctctagtggcaaggagctcctttcaaggacgtatctggg 33647723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 43458561 - 43458615
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtatgtggg 215  Q
    ||||||||||||||| ||| | ||||||| |||||||||||| ||||||| ||||    
T  43458561 aaccaagttgcttgggctccagtggcaagaagctcattccaaggacgtatttggg 43458615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 1446774 - 1446823
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| |||||||    
T  1446774 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtat 1446823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 29895735 - 29895784
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| |||||||    
T  29895735 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtat 29895784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 48317438 - 48317389
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||| | |||||| ||||||||||||| |||||||    
T  48317438 aaccaagttgcttgggctccagtggcaaagagctcattccaatgacgtat 48317389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 1940937 - 1940889
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||| ||||| ||||||||||||| |||||| ||||||    
T  1940937 aaccaagttgtttgggctctagtggcaaggagctccttccaaggacgta 1940889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 3574609 - 3574561
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| ||||||    
T  3574609 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgta 3574561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 34667765 - 34667717
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||| ||||| ||||||||||||| |||||| ||||||    
T  34667765 aaccaagttgtttgggctctagtggcaaggagctccttccaaggacgta 34667717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 41339558 - 41339510
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||| ||||| ||||||||||||| |||||| ||||||    
T  41339558 aaccaagttgtttgggctctagtggcaaggagctccttccaaggacgta 41339510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 52950030 - 52950078
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||| ||||| ||||||||||||| |||||| ||||||    
T  52950030 aaccaagttgtttgggctctagtggcaaggagctccttccaaggacgta 52950078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 10026779 - 10026731
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| ||||||||||||||| |||||| ||||||    
T  10026779 aaccaagttgcttgggctccaatggcaaggagctccttccaaggacgta 10026731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 44193421 - 44193471
Alignment:
Q  160 gaaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    |||||||||||||||||||| | |||||| |||||| |||||| |||||||    
T  44193421 gaaccaagttgcttggactccagtggcaatgagctctttccaatgacgtat 44193471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 3644050 - 3644001
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||| | ||| |||||||||||||||| |||||||    
T  3644050 aaccaagttgcttgggctccagtggaaaggagctcattccaaggacgtat 3644001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 7747217 - 7747266
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| |||||||    
T  7747217 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgtat 7747266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 10046639 - 10046598
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaa 202  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||    
T  10046639 aaccaagttgcttgggctccaatggcaaggagctccttccaa 10046598  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 44548895 - 44548846
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||||||  ||||| ||| |||||||||||| |||||||    
T  44548895 aaccaagttgcttggacttcaatggtaagaagctcattccaaggacgtat 44548846  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 44773208 - 44773257
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgtat 210  Q
    ||||||||||||||||||||| |||||||| |||| || ||| |||||||    
T  44773208 aaccaagttgcttggactctagtggcaaggcgctcctttcaaggacgtat 44773257  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 8410074 - 8410122
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| ||||||    
T  8410074 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgta 8410122  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 18902693 - 18902645
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| ||||||    
T  18902693 aaccaagttgcttgggctccagtggcaaggagctccttccaaggacgta 18902645  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 40969079 - 40969031
Alignment:
Q  160 gaaccaagttgcttggactctaatggcaaggagctcattccaacgacgt 208  Q
    |||||||||||||||| ||||| |||||| ||| ||||||||| |||||    
T  40969079 gaaccaagttgcttgggctctagtggcaatgagttcattccaaggacgt 40969031  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 44945537 - 44945585
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    ||||||||||||||| ||| | ||||||||||||| |||||| ||||||    
T  44945537 aaccaagttgcttgggctcaagtggcaaggagctccttccaaggacgta 44945585  T

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Target: scaffold0376 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 12616 - 12663
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgt 208  Q
    ||||||||||||||||||||| ||||||| ||||| |||||| |||||    
T  12616 aaccaagttgcttggactctagtggcaagaagctccttccaaggacgt 12663  T

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Target: scaffold0316 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 1776 - 1730
Alignment:
Q  162 accaagttgcttggactctaatggcaaggagctcattccaacgacgt 208  Q
    |||||||||||||||||| | ||||||||||||| |||||| |||||    
T  1776 accaagttgcttggactcaagtggcaaggagctccttccaatgacgt 1730  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 68463 - 68511
Alignment:
Q  161 aaccaagttgcttggactctaatggcaaggagctcattccaacgacgta 209  Q
    |||||||||| |||| ||||| ||||||||||||| |||||| ||||||    
T  68463 aaccaagttgtttgggctctagtggcaaggagctccttccaaggacgta 68511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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