View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868_low_3 (Length: 545)
Name: NF4868_low_3
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Original strand, 56313371 - 56313877
Alignment:
| Q |
19 |
gagatatccctatgtcgtgtatacaagagagcaggagtagaagatcatccctccctccctcgttgtctcccaattacacgacnnnnnnnnnnnnnnnnnn |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56313371 |
gagatatccctatgtcgtgtatacaagagagcaggagtagaagatcatccctccctccctcgttgtctcccaattacacgaccatcatcatcatcatcat |
56313470 |
T |
|
| Q |
119 |
nnagaggtactactgcttcacattcagacaagaataagcagcaaaatgaaaaaatattgggaatgggatttgttgttggacaatcaccaaagacaattga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56313471 |
caagaggtactactgcttcacattcagacaagaataagcagcaaaatgaaa---tattgggaatgggatttgttgttggacaatcaccaaagacaattga |
56313567 |
T |
|
| Q |
219 |
tgatcacatagttaacaaaatggaaggaagcagtagcggcggtaattcagatcatgtcacaacaactcttgggctttccaagtatagcaatactcctcct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56313568 |
tgatcacatagttaacaaaatggaaggaagcagtagcggcggtaattcagatcatgtcacaacaactcttgggctttccaagtatagcaatactcctcct |
56313667 |
T |
|
| Q |
319 |
cctactaattaccgttcagaagaggaagaaggattgatgatgat---gcagcagcagcatcaacctaggcacctagtacaatatgctgctgcgggaaact |
415 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
56313668 |
cctactaattaccgttcagaagaagaagaaggattgatgattatgcagcagcagcagcatcaacctaggcacctagtacaatattcagctgcgggaaact |
56313767 |
T |
|
| Q |
416 |
ctctgttagtctccgcttgtggtggcggcgggggcgccattttccctgtctcagcttnnnnnnnnnnnnnnnnntcagtgagctgttccaatactgctac |
515 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
56313768 |
ctctgttagtctccgc---tggtggcggcgggggcgtcattttccctgtctcagcttcagcagcagcag------cagtgagctgttccaatactgctac |
56313858 |
T |
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| Q |
516 |
cagtgctgcaatgatgatg |
534 |
Q |
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||||||||||||||||||| |
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| T |
56313859 |
cagtgctgcaatgatgatg |
56313877 |
T |
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