View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4868_low_7 (Length: 482)
Name: NF4868_low_7
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 45622720 - 45622257
Alignment:
| Q |
1 |
gcctgaaaacgtaccataaagtaaaaacacagtccaaaatttcgtatgaataggaccacattactataagggacaatttttatttcattaatcctgccgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
45622720 |
gcctgaaaacgtaccataaagtaaaaacacaatccaaaatttcttatgaataggaccacataactataagggacaatttttatttcattaatcctgccgg |
45622621 |
T |
|
| Q |
101 |
aagaaaaaatagaaaaacattaccaattttactctctataatgaatagctgcaaaatccagtatgagaatagacgggccatgacgacaggaccccttggt |
200 |
Q |
| |
|
||||||||| |||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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|
| T |
45622620 |
aagaaaaaacagaaaaacattaacaattttattctccataatgaatagctgcaaaatccagtatgagaatagacgggcaatgacgacaggacccctttgt |
45622521 |
T |
|
| Q |
201 |
cagtttggccactccatggtctatgtgaaatacttttcatggccacatttttgaaaccccaatttcgtacccatgcatcttaagaaaattaaggaaagaa |
300 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
45622520 |
caatttggccactccatggtttatgtgaaatacttttcatggccacattttttaaaccccaatttcgtacccatgcatcttaagaaaattaaggatagaa |
45622421 |
T |
|
| Q |
301 |
aagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtcaacaacaacatttaattgct |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45622420 |
aagtgagcgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtcaacaacaacatttaattgct |
45622321 |
T |
|
| Q |
401 |
caaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgt |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45622320 |
caaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgt |
45622257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 22604241 - 22603777
Alignment:
| Q |
1 |
gcctgaaaacgtaccataaagtaaaaacacagtccaaaatttcgtatgaataggaccacattactataagggacaatttttatttcattaatcctgccgg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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|
| T |
22604241 |
gcctaaaaacgtaccataaagtaaaaacacgatccaaaatttcttatgaataggaccacataactataagggacaatttttatttcattaatcctgccag |
22604142 |
T |
|
| Q |
101 |
aagaaaaaatagaaaaacattaccaattttactctctataatgaatagctgcaaaatccagtatgagaatagacgggccatgacgaca-ggaccccttgg |
199 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
22604141 |
aagaaaaaacagaaaaacattaccaattttactctccataatgaatagctgcaaaatccagtatgagaatagacgggcaatgacgacatggaccccttgg |
22604042 |
T |
|
| Q |
200 |
tcagtttggccactccatggtctatgtgaaatacttttcatggccacatttttgaaaccccaatttcgtacccatgcatcttaagaaaattaaggaaaga |
299 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
22604041 |
tcagtttggccactccatggtttatgtgaaatacttttcatggccacatttttgaaaccccaatttcgtagccatgcatcttaagaatattaaggaaaga |
22603942 |
T |
|
| Q |
300 |
aaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtcaacaacaacatttaattgc |
399 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
22603941 |
aaattgagtgaaaagctaattaagaaacctgttatgagcactaattgtttaaggaaccattcattgtggaagacaaaagtcaacaacaacatttaattgc |
22603842 |
T |
|
| Q |
400 |
tcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgt |
464 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22603841 |
tcaaaagaaacaacatttctctagggattccaatcatcggtcaccaaatcctttctgaagtgtgt |
22603777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 15213676 - 15214127
Alignment:
| Q |
1 |
gcctgaaaacgtaccataaagtaaaaacacagtccaaaatttcgtatgaataggaccacattactataagggacaatttttatttcattaatcctgccgg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15213676 |
gcctgaaaacgtaccataaagtcaaaacacgatccaaaatttcttatgaataagaccacataactataagggacaatttttatttcattaatcctgccgg |
15213775 |
T |
|
| Q |
101 |
aagaaaaaatagaaaaacattaccaattttactctctataatgaatagctgcaaaatccagtatgagaatagacgggccatgacgaca-ggaccccttgg |
199 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| |
|
|
| T |
15213776 |
cagaaaaaacagaaaaacattactaattttactctccttaatgaatagctgcaaaatccagtatgagaatagacgggaaatgaggacatggaccccttgg |
15213875 |
T |
|
| Q |
200 |
tcagtttggccactccatggtctatgtgaaatacttttcatggccacatttttgaaaccccaatttcgtacccatgcatcttaagaaaattaaggaaaga |
299 |
Q |
| |
|
||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
15213876 |
tcaattt-gacactccatggtttatgtgaaatacttttcatggccacatttttgaaaccccaatttcgtagccatgcatcttaagaaaattaaggataga |
15213974 |
T |
|
| Q |
300 |
aaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtcaacaacaacatttaattgc |
399 |
Q |
| |
|
||||||| | |||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
15213975 |
aaagtgagcaaaaagctaattaagaaacatgttatgagcactaactgtttaag------------gtggaagacaaaagtcaacaacatcatttcattgc |
15214062 |
T |
|
| Q |
400 |
tcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgt |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15214063 |
tcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgt |
15214127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 15252895 - 15253346
Alignment:
| Q |
1 |
gcctgaaaacgtaccataaagtaaaaacacagtccaaaatttcgtatgaataggaccacattactataagggacaatttttatttcattaatcctgccgg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15252895 |
gcctgaaaacgtaccataaagtcaaaacacgatccaaaatttcttatgaataagaccacataactataagggacaatttttatttcattaatcctgccgg |
15252994 |
T |
|
| Q |
101 |
aagaaaaaatagaaaaacattaccaattttactctctataatgaatagctgcaaaatccagtatgagaatagacgggccatgacgaca-ggaccccttgg |
199 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| |
|
|
| T |
15252995 |
cagaaaaaacagaaaaacattactaattttactctccttaatgaatagctgcaaaatccagtatgagaatagacgggaaatgaggacatggaccccttgg |
15253094 |
T |
|
| Q |
200 |
tcagtttggccactccatggtctatgtgaaatacttttcatggccacatttttgaaaccccaatttcgtacccatgcatcttaagaaaattaaggaaaga |
299 |
Q |
| |
|
||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
15253095 |
tcaattt-gacactccatggtttatgtgaaatacttttcatggccacatttttgaaaccccaatttcgtagccatgcatcttaagaaaattaaggataga |
15253193 |
T |
|
| Q |
300 |
aaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtcaacaacaacatttaattgc |
399 |
Q |
| |
|
||||||| | |||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
15253194 |
aaagtgagcaaaaagctaattaagaaacatgttatgagcactaactgtttaag------------gtggaagacaaaagtcaacaacatcatttcattgc |
15253281 |
T |
|
| Q |
400 |
tcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgt |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15253282 |
tcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgt |
15253346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 272 - 464
Target Start/End: Complemental strand, 20188758 - 20188578
Alignment:
| Q |
272 |
catgcatcttaagaaaattaaggaaagaaaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
20188758 |
catgcatcttaagaaaattaaggaaagaaaagtgagtgaaaagctaattaagaaacctgttatgaacactaactgtttaagg------------tggaaa |
20188671 |
T |
|
| Q |
372 |
acaaaagtcaacaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgt |
464 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20188670 |
acaaaagtcaacaacatcatttaattgatcaaaagaaacaacatttctctaggaatttcaatcatcggtcaccaaatcctttctgaagtgtgt |
20188578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 20188824 - 20188768
Alignment:
| Q |
121 |
taccaattttactctctataatgaatagctgcaaaatccagtatgagaatagacggg |
177 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20188824 |
taccaattttactctccataatgaatagctgcaaaatccagtatgagaatagacggg |
20188768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 65 - 283
Target Start/End: Original strand, 22840011 - 22840236
Alignment:
| Q |
65 |
tataagggacaatttttatttcattaatcctgccggaagaaaaaatagaaaaacat-------taccaattttactctctataatgaatagctgcaaaat |
157 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| |||||| | ||||| | ||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
22840011 |
tataagggacaatttttgtttcattaaacctgccggaaaaaaaaaaaaaaaaaactgaaattttaccaattttactctacataatgtatagctgcaaaat |
22840110 |
T |
|
| Q |
158 |
ccagtatgagaatagacgggccatgacgaca-ggaccccttggtcagtttggccactccatggtctatgtgaaatacttttcatggccacatttttgaaa |
256 |
Q |
| |
|
||||||||||||||| ||| ||||||||| ||| | |||||||| ||||| ||||||||||| | | | ||||||||||||||||||||||||| || |
|
|
| T |
22840111 |
ttagtatgagaatagaccggcaatgacgacatggatcacttggtcactttgg-cactccatggtttgtctcaaatacttttcatggccacatttttagaa |
22840209 |
T |
|
| Q |
257 |
ccccaatttcgtacccatgcatcttaa |
283 |
Q |
| |
|
||| ||||||||| || |||||||||| |
|
|
| T |
22840210 |
cccgaatttcgtagccctgcatcttaa |
22840236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 437
Target Start/End: Complemental strand, 24630606 - 24630537
Alignment:
| Q |
368 |
gatgacaaaagtcaacaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatc |
437 |
Q |
| |
|
|||| ||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24630606 |
gatgccaaaagtcagaaccaacattgaattgctcaaaagaaacaacatttatctaggaattccaatcatc |
24630537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 24630796 - 24630723
Alignment:
| Q |
210 |
cactccatggtctatgtgaaatacttttcatggccacatttttgaaaccccaatttcgtacccatgcatcttaa |
283 |
Q |
| |
|
||||||||||| | ||| |||||| ||||||||||||||||| ||||||| ||| ||| || |||||||||| |
|
|
| T |
24630796 |
cactccatggtttgtgtctaatactcttcatggccacatttttagaaccccagttttgtagccctgcatcttaa |
24630723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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