View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4868_low_8 (Length: 373)

Name: NF4868_low_8
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4868_low_8
NF4868_low_8
[»] chr5 (21 HSPs)
chr5 (10-357)||(30097379-30097726)
chr5 (13-136)||(14302135-14302257)
chr5 (18-135)||(26045659-26045776)
chr5 (11-129)||(26405237-26405354)
chr5 (11-136)||(33109891-33110011)
chr5 (52-138)||(7195031-7195116)
chr5 (18-123)||(13953944-13954049)
chr5 (57-138)||(21398054-21398135)
chr5 (31-135)||(8297740-8297843)
chr5 (49-119)||(7403669-7403737)
chr5 (11-136)||(7682821-7682945)
chr5 (88-136)||(4914266-4914314)
chr5 (11-127)||(5187219-5187334)
chr5 (32-128)||(10174956-10175050)
chr5 (70-134)||(8731169-8731234)
chr5 (11-63)||(8731278-8731330)
chr5 (29-101)||(37108102-37108173)
chr5 (72-134)||(17853821-17853883)
chr5 (88-143)||(7161783-7161836)
chr5 (29-117)||(7391706-7391792)
chr5 (70-134)||(39183951-39184015)
[»] scaffold0050 (1 HSPs)
scaffold0050 (13-134)||(36976-37097)
[»] chr1 (17 HSPs)
chr1 (11-136)||(34775139-34775264)
chr1 (44-136)||(46768443-46768535)
chr1 (44-138)||(6582973-6583067)
chr1 (13-136)||(32882634-32882757)
chr1 (11-136)||(10785150-10785275)
chr1 (32-136)||(32863256-32863360)
chr1 (33-134)||(11439731-11439830)
chr1 (32-129)||(16149049-16149147)
chr1 (37-136)||(31290736-31290833)
chr1 (13-134)||(46603632-46603751)
chr1 (11-99)||(27102488-27102574)
chr1 (70-131)||(38544503-38544564)
chr1 (88-136)||(16577527-16577575)
chr1 (90-134)||(38548844-38548888)
chr1 (32-70)||(9313050-9313088)
chr1 (94-140)||(41126261-41126307)
chr1 (32-69)||(9557241-9557278)
[»] chr8 (8 HSPs)
chr8 (14-135)||(17656428-17656548)
chr8 (11-136)||(10248254-10248380)
chr8 (18-138)||(8862317-8862438)
chr8 (44-136)||(2273773-2273859)
chr8 (11-129)||(12197764-12197881)
chr8 (11-129)||(12442192-12442309)
chr8 (52-136)||(22325826-22325909)
chr8 (58-136)||(43312375-43312452)
[»] chr2 (23 HSPs)
chr2 (11-136)||(41113429-41113551)
chr2 (32-136)||(37770360-37770462)
chr2 (10-136)||(4975012-4975138)
chr2 (10-136)||(4992920-4993046)
chr2 (32-136)||(7696229-7696332)
chr2 (13-136)||(10173270-10173393)
chr2 (69-136)||(12343085-12343151)
chr2 (70-140)||(16952131-16952200)
chr2 (70-140)||(17022796-17022865)
chr2 (70-140)||(17060102-17060171)
chr2 (67-138)||(387440-387508)
chr2 (12-136)||(34230470-34230592)
chr2 (11-76)||(4472270-4472335)
chr2 (70-134)||(22884901-22884963)
chr2 (70-134)||(25504673-25504738)
chr2 (263-357)||(8222543-8222638)
chr2 (11-63)||(25504577-25504629)
chr2 (81-134)||(15126185-15126239)
chr2 (32-70)||(41086514-41086552)
chr2 (11-76)||(22884803-22884868)
chr2 (95-136)||(27879925-27879966)
chr2 (70-134)||(13699051-13699115)
chr2 (44-143)||(29139672-29139773)
[»] chr7 (13 HSPs)
chr7 (33-135)||(24324509-24324610)
chr7 (44-129)||(6492852-6492937)
chr7 (32-143)||(16954750-16954860)
chr7 (26-143)||(1321055-1321171)
chr7 (70-143)||(23983465-23983538)
chr7 (70-134)||(28534276-28534340)
chr7 (50-135)||(33719235-33719319)
chr7 (90-134)||(22567897-22567941)
chr7 (23-119)||(42532960-42533055)
chr7 (23-133)||(3478619-3478729)
chr7 (11-143)||(16828789-16828920)
chr7 (11-136)||(6716425-6716550)
chr7 (305-352)||(31924333-31924381)
[»] chr3 (17 HSPs)
chr3 (32-132)||(50518799-50518898)
chr3 (33-134)||(14194200-14194300)
chr3 (10-134)||(25647953-25648076)
chr3 (44-136)||(48893075-48893166)
chr3 (33-136)||(33143663-33143764)
chr3 (13-76)||(46358073-46358136)
chr3 (11-135)||(4171012-4171136)
chr3 (70-131)||(27399217-27399278)
chr3 (84-136)||(32010029-32010082)
chr3 (13-120)||(14280240-14280345)
chr3 (69-136)||(37123649-37123716)
chr3 (33-98)||(41039463-41039527)
chr3 (18-70)||(14893263-14893315)
chr3 (70-130)||(25594296-25594356)
chr3 (44-134)||(28937444-28937524)
chr3 (70-143)||(823184-823256)
chr3 (102-135)||(14893216-14893249)
[»] chr4 (17 HSPs)
chr4 (32-138)||(41117678-41117783)
chr4 (52-136)||(49747795-49747879)
chr4 (44-138)||(38636955-38637049)
chr4 (32-138)||(39420746-39420851)
chr4 (51-135)||(53823151-53823232)
chr4 (11-135)||(16832709-16832831)
chr4 (44-136)||(19311088-19311179)
chr4 (88-134)||(22810926-22810972)
chr4 (82-135)||(25753442-25753495)
chr4 (13-72)||(28967206-28967265)
chr4 (58-125)||(52009118-52009184)
chr4 (31-117)||(2061541-2061627)
chr4 (248-345)||(11395012-11395110)
chr4 (248-345)||(11404739-11404837)
chr4 (13-64)||(48098645-48098696)
chr4 (94-135)||(42719437-42719478)
chr4 (88-129)||(49528346-49528387)
[»] chr6 (6 HSPs)
chr6 (11-135)||(15120291-15120415)
chr6 (10-119)||(6860317-6860426)
chr6 (70-134)||(17278249-17278313)
chr6 (23-133)||(5607676-5607785)
chr6 (82-136)||(32935102-32935156)
chr6 (81-134)||(16180674-16180727)
[»] scaffold1384 (1 HSPs)
scaffold1384 (10-143)||(1339-1476)
[»] scaffold0063 (1 HSPs)
scaffold0063 (44-136)||(58396-58487)
[»] scaffold1613 (1 HSPs)
scaffold1613 (70-131)||(782-843)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 30097726 - 30097379
Alignment:
Q  10 aagaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacc 109  Q
    ||||||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  30097726 aagaatacaaactaaagacgccgtatataggcggaacacccgaaaataaacaccctaaaaaacatccatgatgacaacacccaccaaaatacacgtcacc 30097627  T
Q  110 acctaaaacagactccttcacgaaaacaaacactttatattggttttatattgtgttacaaaacaaacactattggattagtgagttcatattttggtgg 209  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30097626 acctaaaacagactccttcacgaaaacaagcactttatattggttttatattgtgttacaaaacaaacactattggattagtgagttcatattttggtgg 30097527  T
Q  210 atgaaccgaatggataaaatctgatatcaatattcgatttttatattatgtctaactcatccttataaaatcgccttgttagatgagtaatgtcactctt 309  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30097526 atgaaccgaatggataaactctgatatcaatattcgatttttatattatgtctaactcatccttataaaatcgccttgttagatgagtagtgtcactctt 30097427  T
Q  310 tataaactattttagactttatcgcttttcaatgtggaacttgtgttt 357  Q
    |||||||||||||||||||||||||| |||||| || |||||||||||    
T  30097426 tataaactattttagactttatcgctcttcaatatgaaacttgtgttt 30097379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 14302135 - 14302257
Alignment:
Q  13 aatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacc 112  Q
    ||||||||| | |||||| ||||||||| | ||||||| |||||||| | |||||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  14302135 aatataaacaagagacgccgtatatagaaggaacacccaaaaataaaaatcctaaaaa-cacccctgatgacaacacccaccaaaatacacgtcaccacc 14302233  T
Q  113 taaaacagactccttcacgaaaac 136  Q
    ||||||||| |||||| |||||||    
T  14302234 taaaacagattccttcgcgaaaac 14302257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 26045659 - 26045776
Alignment:
Q  18 aaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaa 117  Q
    |||| |||| ||| ||||||||||| |||| || ||||||||||||||||||||| ||| ||| ||||| |||||||||||| |||||||||||||||||    
T  26045659 aaacaaaaggcgccgtatatagacggaacatccaaaaataaacaccctaaaaaacgcccctgaggacaacacccaccaaaattcacgtcaccacctaaaa 26045758  T
Q  118 cagactccttcacgaaaa 135  Q
    |||||| ||||| |||||    
T  26045759 cagacttcttcatgaaaa 26045776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 26405237 - 26405354
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacca 110  Q
    |||||| |||| |||| ||  |||||||| || |||||||||||||||||||| |||||| ||||| ||| ||||| | |||||||||||||||||||||    
T  26405237 agaatacaaacaaaaggcgtcgtatatagtcggaacacccgaaaataaacaccttaaaaa-cacccctgaggacaacaaccaccaaaatacacgtcacca 26405335  T
Q  111 cctaaaacagactccttca 129  Q
    ||||||||||||| |||||    
T  26405336 cctaaaacagacttcttca 26405354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 33109891 - 33110011
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacca 110  Q
    |||||| |||| ||||||||||||||  | ||||||||||||||||||||||  |||||| |||||   ||||||| |||||||||||||||||||| ||    
T  33109891 agaatacaaacaaaagacgctgtata--gccgaaacacccgaaaataaacactttaaaaa-caccct--atgacaacacccaccaaaatacacgtcatca 33109985  T
Q  111 cctaaaacagactccttcacgaaaac 136  Q
    ||||||||| || |||||||||||||    
T  33109986 cctaaaacaaaccccttcacgaaaac 33110011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 7195031 - 7195116
Alignment:
Q  52 aaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaacaa 138  Q
    ||||||||||||||||||| ||||  ||  ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7195031 aaaataaacaccctaaaaa-caccgctgcggacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacaaaaacaa 7195116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 13953944 - 13954049
Alignment:
Q  18 aaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaa 117  Q
    ||||||||| ||| |||||||| || |||||| ||||||||||||| ||||||| |||| ||| |||||  |||||||||||||| |||| | |||||||    
T  13953944 aaactaaaggcgccgtatataggcggaacacctgaaaataaacaccttaaaaaatacccttgaggacaactcccaccaaaatacatgtcatctcctaaaa 13954043  T
Q  118 cagact 123  Q
    ||||||    
T  13954044 cagact 13954049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 21398054 - 21398135
Alignment:
Q  57 aaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaacaa 138  Q
    ||||||| |||||||||||| ||| ||||| ||  || |||||||||||||||| ||||||||||| |||||||||||||||    
T  21398054 aaacaccttaaaaaacacccctgaggacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaa 21398135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 8297843 - 8297740
Alignment:
Q  31 tgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcac 130  Q
    |||| |||| || |||||| ||||||| |||||||||||| ||||| ||| || || | |||||||||||||| ||||||||||||||| |||||||||     
T  8297843 tgtacataggcggaacacctgaaaatacacaccctaaaaa-cacccctgaggataacatccaccaaaatacacatcaccacctaaaacacactccttcaa 8297745  T
Q  131 gaaaa 135  Q
    |||||    
T  8297744 gaaaa 8297740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 7403737 - 7403669
Alignment:
Q  49 ccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaaca 119  Q
    ||||||||||||||||||||||||  |||||| ||||| |||||||||||| |||||||||||| ||||||    
T  7403737 ccgaaaataaacaccctaaaaaac--ccatgaagacaacacccaccaaaattcacgtcaccaccgaaaaca 7403669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 7682945 - 7682821
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacca 110  Q
    |||||| ||| ||||| ||  |||||||| || |||| |||||||||| ||||| |||||| ||  ||||  |||| |||||||||||||||| ||||||    
T  7682945 agaatacaaattaaaggcgtcgtatataggcggaacatccgaaaataagcaccc-aaaaaatacttatgagaacaacacccaccaaaatacacatcacca 7682847  T
Q  111 cctaaaacagactccttcacgaaaac 136  Q
    ||||||| |||||| ||||| |||||    
T  7682846 cctaaaatagactctttcacaaaaac 7682821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 4914266 - 4914314
Alignment:
Q  88 acccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    |||||||||||||||| |||||||||||| ||||||| |||||||||||    
T  4914266 acccaccaaaatacacttcaccacctaaatcagactctttcacgaaaac 4914314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 5187334 - 5187219
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacca 110  Q
    |||||| |||| |||| ||| | ||||||| ||| |||||||||||||||||| | |||| ||| ||||| || || | ||||| || ||||| ||||||    
T  5187334 agaatacaaacaaaaggcgccgcatatagatgaagcacccgaaaataaacaccat-aaaagcactcatgaggataacatccacccaagtacacatcacca 5187236  T
Q  111 cctaaaacagactcctt 127  Q
    |||||| ||||||||||    
T  5187235 cctaaaccagactcctt 5187219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 10175050 - 10174956
Alignment:
Q  32 gtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttc 128  Q
    |||||||| | ||||||| |||| |||||| |||||||| ||||   || ||||| |||||||||| ||||||| ||||||||||||||||||||||    
T  10175050 gtatataggcaaaacacctgaaa-taaacatcctaaaaa-cacctccgaggacaacacccaccaaagtacacgtaaccacctaaaacagactccttc 10174956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 8731234 - 8731169
Alignment:
Q  70 aacacccatgatgacaat-acccaccaaaatacacgtcaccacctaaaacagactccttcacgaaa 134  Q
    ||||||| |||||||||  ||||||||||||| || ||||||||||||||||| || |||||||||    
T  8731234 aacacccctgatgacaaacacccaccaaaataaacatcaccacctaaaacagagtctttcacgaaa 8731169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 8731330 - 8731278
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacacc 63  Q
    |||||| |||| |||| ||| ||||||||||||||||||| ||||||||||||    
T  8731330 agaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacc 8731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 37108173 - 37108102
Alignment:
Q  29 gctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatac 101  Q
    ||||||||||| || |||| |  ||||||||||||||||||| ||||||||| || || ||||||||||||||    
T  37108173 gctgtatataggcggaacatcaaaaaataaacaccctaaaaa-cacccatgaggataacacccaccaaaatac 37108102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 17853821 - 17853883
Alignment:
Q  72 cacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaa 134  Q
    ||||||||| || || ||||||||||||| || |||||  |||||||||||||||| ||||||    
T  17853821 cacccatgaggaaaacacccaccaaaataaacatcaccttctaaaacagactcctttacgaaa 17853883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 7161783 - 7161836
Alignment:
Q  88 acccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaacaaacact 143  Q
    ||||||||||| |||  |||| ||||||||||||||||||||| ||||||| ||||    
T  7161783 acccaccaaaacaca--tcactacctaaaacagactccttcacaaaaacaagcact 7161836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 7391706 - 7391792
Alignment:
Q  29 gctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaa 117  Q
    ||||||||||| || || ||| |||| || ||| |||||||| ||||||||| ||||| ||| | ||||||||| ||||||||||||||    
T  7391706 gctgtatataggcggaaaacctgaaagtacacaacctaaaaa-cacccatgaggacaacacc-atcaaaatacatgtcaccacctaaaa 7391792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 39183951 - 39184015
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaa 134  Q
    ||||||| ||| ||||| |||||| |||||| |  ||||||||||||||||||||  ||||||||    
T  39183951 aacacccttgaggacaacacccactaaaataaagatcaccacctaaaacagactctatcacgaaa 39184015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 37097 - 36976
Alignment:
Q  13 aatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacc 112  Q
    |||| |||| ||||||||||||||||| || |||| ||||||||||||||| |||||||||||||||| ||| | ||||| |||||||||||||||||||    
T  37097 aatacaaacaaaagacgctgtatataggcggaacatccgaaaataaacaccataaaaaacacccatgaggaccacacccaacaaaatacacgtcaccacc 36998  T
Q  113 taaaacagactccttcacgaaa 134  Q
    ||||||||||||||||||||||    
T  36997 taaaacagactccttcacgaaa 36976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 34775264 - 34775139
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacca 110  Q
    |||||| ||||||||| ||| |||||||| || |||||||||||||||||||| ||||||| ||| |||| ||||| |||||||||||||||||||| ||    
T  34775264 agaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccttaaaaaataccaatgaggacaacacccaccaaaatacacgtcatca 34775165  T
Q  111 cctaaaacagactccttcacgaaaac 136  Q
    ||||||||||||||||||||||||||    
T  34775164 cctaaaacagactccttcacgaaaac 34775139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 46768535 - 46768443
Alignment:
Q  44 aacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    |||||||||||||||||||||||||||||||||  || ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46768535 aacacccgaaaataaacaccctaaaaaacacccccgaggacaacacccaccaaaattcacgtcaccacctaaaacagactccttcacgaaaac 46768443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 6582973 - 6583067
Alignment:
Q  44 aacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaacaa 138  Q
    |||||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  6582973 aacacccgaaaataaacaccataaaaaacactcatgatgataacacccaccaaaatacacgtcaccacctaaaacagactcctacacgagaacaa 6583067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 32882757 - 32882634
Alignment:
Q  13 aatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacc 112  Q
    |||| ||||||||| ||| |||||||| |  |||||||||||||||||||||||||| ||||||  || ||||| ||||||||||||| || ||||| ||    
T  32882757 aatacaaactaaaggcgccgtatataggcagaacacccgaaaataaacaccctaaaagacacccccgaggacaacacccaccaaaatatacatcaccgcc 32882658  T
Q  113 taaaacagactccttcacgaaaac 136  Q
    |||||| |||||||||||||||||    
T  32882657 taaaactgactccttcacgaaaac 32882634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 10785150 - 10785275
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacca 110  Q
    |||||| |||||||| |||| ||| | || || ||||||| || ||||||||| |||||||||||| ||| ||||| ||||| ||||||||| || | ||    
T  10785150 agaatacaaactaaaaacgccgtacaaagtcggaacacccaaatataaacaccttaaaaaacacccttgaggacaacacccatcaaaatacatgttatca 10785249  T
Q  111 cctaaaacagactccttcacgaaaac 136  Q
    | ||||||||||||||||||||||||    
T  10785250 cttaaaacagactccttcacgaaaac 10785275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 32863256 - 32863360
Alignment:
Q  32 gtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacg 131  Q
    |||||||| || |||||| |||||||||||||   ||||||||||| || ||||| ||||||||| |||||||||||| ||||||||||| |||| ||||    
T  32863256 gtatataggcggaacacctgaaaataaacaccaagaaaaacacccaagaggacaacacccaccaacatacacgtcaccgcctaaaacagaatcctccacg 32863355  T
Q  132 aaaac 136  Q
    |||||    
T  32863356 aaaac 32863360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 11439731 - 11439830
Alignment:
Q  33 tatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacga 132  Q
    |||||||||| |||| |||||||||||||||||||||  | ||  ||| ||||| | ||||||||||||||||||||||||||||||||  |||||||||    
T  11439731 tatatagacggaacatccgaaaataaacaccctaaaatccccc--tgaagacaacatccaccaaaatacacgtcaccacctaaaacagatcccttcacga 11439828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 16149147 - 16149049
Alignment:
Q  32 gtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaata-cccaccaaaatacacgtcaccacctaaaacagactccttca 129  Q
    |||||||| || ||||| |||||||||||||||||||| ||| || ||| ||||| | ||| | |||||||||||||||||||||||||||| ||||||    
T  16149147 gtatataggcggaacacgcgaaaataaacaccctaaaagacaaccttgaggacaaaagcccgctaaaatacacgtcaccacctaaaacagacaccttca 16149049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 31290736 - 31290833
Alignment:
Q  37 tagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    |||||| |||||||||||||||||||| |||||| ||||| ||| |||||| |||  || | ||||| |||||||||||| ||||||||||| |||||||    
T  31290736 tagacggaacacccgaaaataaacaccataaaaa-cacccctgaggacaattcccttcata-tacacatcaccacctaaatcagactccttcgcgaaaac 31290833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 46603751 - 46603632
Alignment:
Q  13 aatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacc 112  Q
    |||| |||| ||||||| ||||||||| || |||||||||||||||| ||   | |||| |||| ||| ||||| ||||||||||||| |  |||||| |    
T  46603751 aatacaaacaaaagacgttgtatataggcggaacacccgaaaataaa-acatcataaaagacccctgaagacaacacccaccaaaataaaa-tcaccatc 46603654  T
Q  113 taaaacagactccttcacgaaa 134  Q
    ||||||||||| ||||||||||    
T  46603653 taaaacagacttcttcacgaaa 46603632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 27102574 - 27102488
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaat 99  Q
    |||||| |||| ||||  || |||||||| || ||||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||    
T  27102574 agaatacaaacaaaaggtgccgtatataggcggaacacccgaaaataaacacccta-aaaaca-ccatgaggacaacacccaccaaaat 27102488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 38544503 - 38544564
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacg 131  Q
    ||||||||||| ||||| |  |||||||||| || |||||||||||||||||||| ||||||    
T  38544503 aacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttcacg 38544564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 16577575 - 16577527
Alignment:
Q  88 acccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    ||||||||||||| || ||| |||||||||||||||| |||||||||||    
T  16577575 acccaccaaaataaacatcatcacctaaaacagactctttcacgaaaac 16577527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 38548844 - 38548888
Alignment:
Q  90 ccaccaaaatacacgtcaccacctaaaacagactccttcacgaaa 134  Q
    ||||||||||| || |||||||||||||||||||| |||||||||    
T  38548844 ccaccaaaataaacatcaccacctaaaacagactctttcacgaaa 38548888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 9313050 - 9313088
Alignment:
Q  32 gtatatagacgaaacacccgaaaataaacaccctaaaaa 70  Q
    |||||||| || |||||||||||||||||||||||||||    
T  9313050 gtatataggcggaacacccgaaaataaacaccctaaaaa 9313088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 41126261 - 41126307
Alignment:
Q  94 caaaatacacgtcaccacctaaaacagactccttcacgaaaacaaac 140  Q
    |||||||||  |||||||||||||||||| | |||||||||||||||    
T  41126261 caaaatacatatcaccacctaaaacagacgcattcacgaaaacaaac 41126307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 9557278 - 9557241
Alignment:
Q  32 gtatatagacgaaacacccgaaaataaacaccctaaaa 69  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  9557278 gtatataaacgaaacacccgaaaataaacaccttaaaa 9557241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 17656428 - 17656548
Alignment:
Q  14 atataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacct 113  Q
    |||||||| |||| ||  ||||||||||| ||||||||||||| ||||||||||||| ||||| ||| ||||| |||||||||||| |||||||||| ||    
T  17656428 atataaacaaaaggcgtcgtatatagacggaacacccgaaaattaacaccctaaaaa-cacccttgaggacaacacccaccaaaattcacgtcaccatct 17656526  T
Q  114 aaaacagactccttcacgaaaa 135  Q
    |||||||||||||||| |||||    
T  17656527 aaaacagactccttcaagaaaa 17656548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 10248254 - 10248380
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaa-caccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacc 109  Q
    |||||| || |||||| ||  |||||||| || ||||||| |||| ||| |||| |||||||||||| ||| ||||| |||| |||||||||||||||||    
T  10248254 agaatacaacctaaaggcgtcgtatataggcggaacaccctaaaaaaaaacaccttaaaaaacacccttgaggacaacacccgccaaaatacacgtcacc 10248353  T
Q  110 acctaaaacagactccttcacgaaaac 136  Q
    |||||||||| ||||||||||||||||    
T  10248354 acctaaaacaaactccttcacgaaaac 10248380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 8862317 - 8862438
Alignment:
Q  18 aaactaaagacgctgtatatagacgaaacacccgaaaa-taaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaa 116  Q
    |||| |||| ||| ||||||||||| |||| ||||||| |||||||| ||||||||||||   | ||||| |||||| ||||||||||||||||||||||    
T  8862317 aaacaaaaggcgccgtatatagacggaacatccgaaaaataaacaccataaaaaacaccccgaaggacaacacccacaaaaatacacgtcaccacctaaa 8862416  T
Q  117 acagactccttcacgaaaacaa 138  Q
    || ||||| | ||||| |||||    
T  8862417 actgactcttacacgagaacaa 8862438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 2273773 - 2273859
Alignment:
Q  44 aacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    |||||| ||||||||||||||||||||| | ||  |||||||| ||||||| ||||||||||||||     ||||||||||||||||||||||    
T  2273773 aacacctgaaaataaacaccctaaaaaatatcctggatgacaacacccacc-aaatacacgtcacc-----aaacagactccttcacgaaaac 2273859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 12197764 - 12197881
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacca 110  Q
    |||||| ||||||||| ||  || ||||| || |||||  ||||||||||||||||||| |||||  ||  ||||| ||| || ||||||||||||||||    
T  12197764 agaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacacctctggggacaacacc-acaaaaatacacgtcacca 12197862  T
Q  111 cctaaaacagactccttca 129  Q
    |||| ||||||| ||||||    
T  12197863 cctacaacagacgccttca 12197881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 12442192 - 12442309
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacca 110  Q
    |||||| ||||||||| ||  || ||||| || |||||  ||||||||||||||||||| |||||  ||  ||||| ||| || ||||||||||||||||    
T  12442192 agaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacacctctggggacaacacc-acaaaaatacacgtcacca 12442290  T
Q  111 cctaaaacagactccttca 129  Q
    |||| ||||||| ||||||    
T  12442291 cctacaacagacgccttca 12442309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 22325826 - 22325909
Alignment:
Q  52 aaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    |||||||||| ||||||| |||||||| ||||| | ||||||||||||| | |||||||  ||||||||||||||| || |||||    
T  22325826 aaaataaacatcctaaaa-acacccataatgacgacacccaccaaaatataggtcaccatataaaacagactccttaacaaaaac 22325909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 43312375 - 43312452
Alignment:
Q  58 aacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    |||| |||||||||||||  |||  |||| ||||| ||||||||| ||||||||||||| ||||||||| ||| |||||    
T  43312375 aacatcctaaaaaacaccgctgaa-acaacacccatcaaaatacatgtcaccacctaaatcagactcctacacaaaaac 43312452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 41113429 - 41113551
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacca 110  Q
    |||||| |||||||||||  ||||||||| || |||| ||||||||||| |||||||||||||||||||| | |   ||||||||||||| |||| || |    
T  41113429 agaatacaaactaaagacattgtatataggcggaacatccgaaaataaataccctaaaaaacacccatgagggc---acccaccaaaataaacgttacta 41113525  T
Q  111 cctaaaacagactccttcacgaaaac 136  Q
    ||||||||||||||||||||||||||    
T  41113526 cctaaaacagactccttcacgaaaac 41113551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 37770360 - 37770462
Alignment:
Q  32 gtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacg 131  Q
    |||||||| || ||||||||||||||||||||||||||| |||| |||| || |  |||||||||||| |||||||||||||||||||||||||||||||    
T  37770360 gtatataggcggaacacccgaaaataaacaccctaaaaa-cacc-atgaggataccacccaccaaaatccacgtcaccacctaaaacagactccttcacg 37770457  T
Q  132 aaaac 136  Q
    |||||    
T  37770458 aaaac 37770462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 4975138 - 4975012
Alignment:
Q  10 aagaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacc 109  Q
    ||||||| ||||||||| ||  |||||||| |  |||||||||||||||||||||| ||||||| || ||| || || |||||||||| |||||  ||||    
T  4975138 aagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccacc 4975039  T
Q  110 acctaaaacagactccttcacgaaaac 136  Q
    |||||||||||||| ||||||||||||    
T  4975038 acctaaaacagacttcttcacgaaaac 4975012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 4993046 - 4992920
Alignment:
Q  10 aagaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacc 109  Q
    ||||||| ||||||||| ||  |||||||| |  |||||||||||||||||||||| ||||||| || ||| || || |||||||||| |||||  ||||    
T  4993046 aagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccacc 4992947  T
Q  110 acctaaaacagactccttcacgaaaac 136  Q
    |||||||||||||| ||||||||||||    
T  4992946 acctaaaacagacttcttcacgaaaac 4992920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 7696332 - 7696229
Alignment:
Q  32 gtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacg 131  Q
    |||||||| || ||||||| |||||||||||| |||||| |||||  || ||||| |||||||||||||||| ||||||||||||| | |||||||||||    
T  7696332 gtatataggcggaacacccaaaaataaacaccttaaaaa-cacccccgaggacaacacccaccaaaatacacatcaccacctaaaataaactccttcacg 7696234  T
Q  132 aaaac 136  Q
    |||||    
T  7696233 aaaac 7696229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 10173270 - 10173393
Alignment:
Q  13 aatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacc 112  Q
    |||| ||||||||  || ||||||||| || |||||| ||||||||||||||||||| | |||  ||| ||||||||||| ||||||||| |||||  ||    
T  10173270 aatacaaactaaaagcgttgtatataggcggaacacctgaaaataaacaccctaaaagatacctctgaggacaatacccatcaaaatacatgtcacggcc 10173369  T
Q  113 taaaacagactccttcacgaaaac 136  Q
    ||||||||||  ||||| ||||||    
T  10173370 taaaacagacgtcttcatgaaaac 10173393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 12343151 - 12343085
Alignment:
Q  69 aaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    |||||||| ||| ||||| | ||| |||||||||||||||||||||||||||||||||||||||||||    
T  12343151 aaacaccc-tgaggacaacatccatcaaaatacacgtcaccacctaaaacagactccttcacgaaaac 12343085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 16952131 - 16952200
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaacaaac 140  Q
    ||||||||||| ||||| |||||| |||||| || ||||||| |||||||||| |||||||||||||||||    
T  16952131 aacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaac 16952200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 17022796 - 17022865
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaacaaac 140  Q
    ||||||||||| ||||| |||||| |||||| || ||||||| |||||||||| |||||||||||||||||    
T  17022796 aacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaac 17022865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 17060102 - 17060171
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaacaaac 140  Q
    ||||||||||| ||||| |||||| |||||| || ||||||| |||||||||| |||||||||||||||||    
T  17060102 aacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaac 17060171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 387508 - 387440
Alignment:
Q  67 aaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaacaa 138  Q
    |||||||||||||| || || ||||||||||| |||  |||||||||||||||||||||||||| |||||||    
T  387508 aaaaacacccatgaagataa-acccaccaaaacaca--tcaccacctaaaacagactccttcacaaaaacaa 387440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 34230592 - 34230470
Alignment:
Q  12 gaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccac 111  Q
    ||||| |||| |||||||| |||||||| || ||||||  |||||||||| | |||||| ||||| | |  |||| | |||||||||||||||||||||     
T  34230592 gaatacaaacaaaagacgccgtatataggcggaacaccaaaaaataaacatcgtaaaaa-caccccttagaacaacatccaccaaaatacacgtcaccat 34230494  T
Q  112 ctaaaacagactccttcacgaaaac 136  Q
    || |||||||||| | |||||||||    
T  34230493 ct-aaacagactcttccacgaaaac 34230470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 4472335 - 4472270
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacaccc 76  Q
    |||||| ||||||||| ||  ||||||||||| |||| ||||||||||||||| |||||| |||||    
T  4472335 agaatacaaactaaaggcgtcgtatatagacggaacatccgaaaataaacaccataaaaatcaccc 4472270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 22884901 - 22884963
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaa 134  Q
    ||||||||||  ||||| |||||| |||| |||  ||||||||||||||||||||||||||||||    
T  22884901 aacacccatgtggacaacacccactaaaaaaca--tcaccacctaaaacagactccttcacgaaa 22884963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 25504673 - 25504738
Alignment:
Q  70 aacacccatgatgacaat-acccaccaaaatacacgtcaccacctaaaacagactccttcacgaaa 134  Q
    ||||||| |||||||||  ||||||||||||| || ||||||||||||||||| || |||||||||    
T  25504673 aacacccctgatgacaaacacccaccaaaataaacatcaccacctaaaacagagtctttcacgaaa 25504738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 357
Target Start/End: Complemental strand, 8222638 - 8222543
Alignment:
Q  263 aactcatccttataaaatcgccttgttagatgagtaatgtcactctttataaactatttt-agactttatc-gcttttcaatgtggaacttgtgttt 357  Q
    |||||||||||| |||| || ||||| || |||||  ||||||||||||||||||||||| || | ||||| | |||||||||||||||||| ||||    
T  8222638 aactcatccttacaaaaccgacttgtaaggtgagtc-tgtcactctttataaactattttcaggccttatctgtttttcaatgtggaacttgggttt 8222543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 25504577 - 25504629
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacacc 63  Q
    |||||| |||| |||| ||| ||||||||||||||||||| ||||||||||||    
T  25504577 agaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacc 25504629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 15126185 - 15126239
Alignment:
Q  81 tgacaatacccaccaaaatacacgtcaccacct-aaaacagactccttcacgaaa 134  Q
    |||||||||||||||||||| || ||||||||| |||||| |||| |||||||||    
T  15126185 tgacaatacccaccaaaataaacatcaccacctaaaaacaaactcgttcacgaaa 15126239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 41086514 - 41086552
Alignment:
Q  32 gtatatagacgaaacacccgaaaataaacaccctaaaaa 70  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  41086514 gtatataggcgaaacacccgaaaataaataccctaaaaa 41086552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 22884803 - 22884868
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacaccc 76  Q
    |||||| ||||||||| ||  |||||||| || ||||||||||||||||| || || |||||||||    
T  22884803 agaatacaaactaaaggcgtcgtatataggcggaacacccgaaaataaactccatacaaaacaccc 22884868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 27879925 - 27879966
Alignment:
Q  95 aaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    |||||| || ||||||||||||||||||||||||| ||||||    
T  27879925 aaaataaacatcaccacctaaaacagactccttcaggaaaac 27879966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 13699051 - 13699115
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaa 134  Q
    ||||||| ||| || || ||||||||||||| || ||||||||||||||| |||| || ||||||    
T  13699051 aacacccctgaagataacacccaccaaaataaacatcaccacctaaaacacactcttttacgaaa 13699115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 29139672 - 29139773
Alignment:
Q  44 aacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcac---cacctaaaacagactccttcacgaaaacaaac 140  Q
    ||||| |||||||||| ||| |||||| ||||  |||  |||| | |||||||||||||||||||   ||||||||| |||||| ||||| ||||||| |    
T  29139672 aacactcgaaaataaataccttaaaaa-cacctctgaaaacaacatccaccaaaatacacgtcaccgtcacctaaaagagactctttcacaaaaacaacc 29139770  T
Q  141 act 143  Q
    |||    
T  29139771 act 29139773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 24324509 - 24324610
Alignment:
Q  33 tatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacga 132  Q
    |||||||  ||||||||||||||||||||| ||||||| ||||| ||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||    
T  24324509 tatatagctgaaacacccgaaaataaacactctaaaaa-cacccttgaggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacga 24324607  T
Q  133 aaa 135  Q
    |||    
T  24324608 aaa 24324610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 6492852 - 6492937
Alignment:
Q  44 aacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttca 129  Q
    |||||| ||||||||||||| ||||||||||| |||| ||||| | |||||||||| |||||||||||||||||||||||||||||    
T  6492852 aacacctgaaaataaacaccataaaaaacacctatgaggacaacatccaccaaaattcacgtcaccacctaaaacagactccttca 6492937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 16954860 - 16954750
Alignment:
Q  32 gtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacg 131  Q
    |||||||| || |||| |||||||||||||| ||||||| ||||| ||| || || | |||| ||||||||||||||||||||||||||||  ||||| |    
T  16954860 gtatataggcggaacatccgaaaataaacacgctaaaaa-cacccctgaagaaaacaaccacaaaaatacacgtcaccacctaaaacagacatcttcaag 16954762  T
Q  132 aaaacaaacact 143  Q
    ||||||| ||||    
T  16954761 aaaacaaccact 16954750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 1321171 - 1321055
Alignment:
Q  26 gacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactcc 125  Q
    ||||| |||||||| || ||| ||||||||||||||||||||||| |  || ||| ||||  | |||||||||||||| |||||||||||||||||| ||    
T  1321171 gacgccgtatataggcggaactcccgaaaataaacaccctaaaaacc--ccttgaagacaccatccaccaaaatacacatcaccacctaaaacagacccc 1321074  T
Q  126 -ttcacgaaaacaaacact 143  Q
     ||||||||| ||| ||||    
T  1321073 tttcacgaaagcaaccact 1321055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 23983538 - 23983465
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaacaaacact 143  Q
    ||||| ||||| ||||| ||||||||||||| ||  ||||||||||||||||||| ||||||||||||| ||||    
T  23983538 aacacacatgaggacaacacccaccaaaataaacaccaccacctaaaacagactcattcacgaaaacaaccact 23983465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 28534276 - 28534340
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaa 134  Q
    ||||||| ||| ||||| ||||||||||||| || |||||||||||||||||||| |||||||||    
T  28534276 aacacccctgaggacaacacccaccaaaataaacatcaccacctaaaacagactctttcacgaaa 28534340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 33719319 - 33719235
Alignment:
Q  50 cgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaa 135  Q
    ||||| ||||||||||||||| ||| ||||| ||||| ||||||||||||||   ||||| |||||||| ||||||||||| ||||    
T  33719319 cgaaagtaaacaccctaaaaa-cactcatgaggacaacacccaccaaaatacctatcaccgcctaaaaccgactccttcacaaaaa 33719235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 22567897 - 22567941
Alignment:
Q  90 ccaccaaaatacacgtcaccacctaaaacagactccttcacgaaa 134  Q
    |||||||||||||| |||||||||||||||||||| |||||||||    
T  22567897 ccaccaaaatacacatcaccacctaaaacagactctttcacgaaa 22567941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 42532960 - 42533055
Alignment:
Q  23 aaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaaca 119  Q
    |||| ||| |||||||| || |||||| | |||||||||||||||||| | ||| ||||||||| |||||| |||| | |||||| |||||||||||    
T  42532960 aaaggcgccgtatataggcggaacacctggaaataaacaccctaaaaa-ctcccttgatgacaacacccacaaaaaaatacgtcatcacctaaaaca 42533055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 3478729 - 3478619
Alignment:
Q  23 aaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagac 122  Q
    |||| ||| |||||||| || |||||||||||||||||||||||||| |||  |  ||  |||| | ||||||||| ||| ||||||| || ||||||||    
T  3478729 aaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacaatccagagcacaacatccaccaaaaaacaagtcaccaactcaaacagac 3478630  T
Q  123 tccttcacgaa 133  Q
      |||||||||    
T  3478629 gtcttcacgaa 3478619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 16828789 - 16828920
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacca 110  Q
    |||||| |||| |||  ||| |||||||| || |||||||||||||||||| ||| | ||| |||| ||| || || | |||||||||||||| ||| ||    
T  16828789 agaatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaacatcct-agaaatacccctgaagaaaacaaccaccaaaatacacatcatca 16828887  T
Q  111 cctaaaacagactccttcacgaaaacaaacact 143  Q
     ||||||| | | |||||| |||||||| ||||    
T  16828888 tctaaaactggccccttcaagaaaacaaccact 16828920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 6716425 - 6716550
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccct--aaaaaacacccatgatgacaatacccaccaaaatacacgtcac 108  Q
    |||||| ||| |||||  || |||||||  || |||||| |||||||||||||||  ||||||||| || || || || ||| ||| || |||| | |||    
T  6716425 agaatacaaattaaaggggccgtatataaccggaacacctgaaaataaacaccctaaaaaaaacactcacgaggataacaccaacccaagtacatgacac 6716524  T
Q  109 cacctaaaacagactccttcacgaaaac 136  Q
    ||||||||||  ||||||||||||||||    
T  6716525 cacctaaaac--actccttcacgaaaac 6716550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 31924381 - 31924333
Alignment:
Q  305 ctctttataaactatttta-gactttatcgcttttcaatgtggaacttg 352  Q
    ||||||||||||||||||| ||| ||||  |||||||||||||||||||    
T  31924381 ctctttataaactattttaagaccttatatcttttcaatgtggaacttg 31924333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 50518799 - 50518898
Alignment:
Q  32 gtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacg 131  Q
    |||||||| || |||||||||||||||||||||||||| |||||||||| ||| | ||||| |||||||||| |||||| ||||||||||||||||||||    
T  50518799 gtatataggcggaacacccgaaaataaacaccctaaaa-acacccatgaggaccacacccaacaaaatacacctcaccatctaaaacagactccttcacg 50518897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 14194300 - 14194200
Alignment:
Q  33 tatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacga 132  Q
    ||||||| || |||| ||||||||||||| |||||||| ||| ||||| ||| | |||||||||||||||||||||||||||||||||||||| ||||||    
T  14194300 tatataggcggaacatccgaaaataaacatcctaaaaa-cactcatgaggaccacacccaccaaaatacacgtcaccacctaaaacagactccatcacga 14194202  T
Q  133 aa 134  Q
    ||    
T  14194201 aa 14194200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 25648076 - 25647953
Alignment:
Q  10 aagaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacc 109  Q
    ||||||| |||| |||| ||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||| | ||||||||||  ||| ||||||    
T  25648076 aagaatacaaacaaaaggcgcagtatatagacggaacacccgaaaataaacacccta-aaaacacacatgaggaccacacccaccaaataacatgtcacc 25647978  T
Q  110 acctaaaacagactccttcacgaaa 134  Q
    || ||||||| ||||| ||||||||    
T  25647977 acataaaacatactccatcacgaaa 25647953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 48893075 - 48893166
Alignment:
Q  44 aacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    |||| ||||||||||||||  |||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||| ||||||||| || |||||    
T  48893075 aacatccgaaaataaacactttaaaaa-cacccctgaagacaacacccaccaaaatacatgtcaccacctaaaagagactcctttacaaaaac 48893166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 33143663 - 33143764
Alignment:
Q  33 tatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacga 132  Q
    ||||||| || |||||||||||| |||||||| ||||||| |||| || || || | |||||| || |||||||||||||||||||| ||||||||||||    
T  33143663 tatataggcggaacacccgaaaa-aaacaccc-aaaaaactcccaagaggataacatccaccataaaacacgtcaccacctaaaacaaactccttcacga 33143760  T
Q  133 aaac 136  Q
    ||||    
T  33143761 aaac 33143764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 46358073 - 46358136
Alignment:
Q  13 aatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacaccc 76  Q
    |||| |||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||    
T  46358073 aatacaaactaaagacgctgtatataggcgaaacacctgaaaataaacaccttaaaagacaccc 46358136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 4171136 - 4171012
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaa-tacacgtcacc 109  Q
    |||||| |||| |||| ||  |||||||| || |||||| |||||||||||||||||||| || |  ||| ||||| |||||| |||| || |||||| |    
T  4171136 agaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa-catcattgaggacaacacccacaaaaaatatacgtcatc 4171038  T
Q  110 acctaaaacagactccttcacgaaaa 135  Q
    |||||||| |||||||||||||||||    
T  4171037 acctaaaatagactccttcacgaaaa 4171012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 27399278 - 27399217
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacg 131  Q
    ||||||||||| ||||| ||||||||||||| || ||| |||||||||||| ||||||||||    
T  27399278 aacacccatgaggacaacacccaccaaaataaacatcatcacctaaaacaggctccttcacg 27399217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 32010082 - 32010029
Alignment:
Q  84 caatacccacc-aaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    ||||||||||| |||||| || ||||||||||||||||||||||||||||||||    
T  32010082 caatacccacccaaaataaacatcaccacctaaaacagactccttcacgaaaac 32010029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 14280240 - 14280345
Alignment:
Q  13 aatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacc 112  Q
    |||| ||| ||||| ||| |||||||| || ||||||||||| ||||||| || ||||   ||  ||| ||||| |||||| ||||||||||||||||||    
T  14280240 aatacaaattaaaggcgccgtatataggcggaacacccgaaagtaaacactctgaaaatatcc--tgaggacaacacccactaaaatacacgtcaccacc 14280337  T
Q  113 taaaacag 120  Q
    ||||||||    
T  14280338 taaaacag 14280345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 37123716 - 37123649
Alignment:
Q  69 aaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    |||||||| ||| ||||| |||||||||||||||| ||||||  ||||| ||||| ||||||||||||    
T  37123716 aaacacccttgaagacaacacccaccaaaatacacatcaccatataaaatagacttcttcacgaaaac 37123649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 41039527 - 41039463
Alignment:
Q  33 tatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaa 98  Q
    ||||||| || |||||| |||||||||||||||| ||||||||| ||| ||||| |||||||||||    
T  41039527 tatataggcggaacaccagaaaataaacacccta-aaaacacccgtgaagacaacacccaccaaaa 41039463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 14893315 - 14893263
Alignment:
Q  18 aaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaa 70  Q
    |||| |||||||| |||||||| || |||||| ||||||||||||||||||||    
T  14893315 aaacaaaagacgccgtatataggcggaacacctgaaaataaacaccctaaaaa 14893263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 25594296 - 25594356
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcac 130  Q
    ||||||||||| ||||| |||||||| |||| || |||| |||||||||| ||||||||||    
T  25594296 aacacccatgaggacaacacccaccacaataaacatcactacctaaaacatactccttcac 25594356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 28937444 - 28937524
Alignment:
Q  44 aacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaa 134  Q
    |||||||||||||||||||||||||||   ||||  ||||||| ||||||||||||        ||||||||||||||| |||||||||||    
T  28937444 aacacccgaaaataaacaccctaaaaacacccca--atgacaacacccaccaaaat--------ccacctaaaacagaccccttcacgaaa 28937524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 823184 - 823256
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaacaaacact 143  Q
    ||||||||||| ||||  ||||||||||||  || ||||||||||||||| ||||| |||| ||||||| ||||    
T  823184 aacacccatgaggacatcacccaccaaaattaacttcaccacctaaaacaaactccatcac-aaaacaaccact 823256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 14893249 - 14893216
Alignment:
Q  102 acgtcaccacctaaaacagactccttcacgaaaa 135  Q
    |||||||||||||||||||||||||||| |||||    
T  14893249 acgtcaccacctaaaacagactccttcaagaaaa 14893216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 41117678 - 41117783
Alignment:
Q  32 gtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacg 131  Q
    |||||||| || ||||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||||  |||||||||| ||||||||| | ||||    
T  41117678 gtatataggcggaacacccgaaaataaacaccctaaataacacc-atgaggacaacacccaccaaaatacatatcaccacctagaacagactcatgcacg 41117776  T
Q  132 aaaacaa 138  Q
    |||||||    
T  41117777 aaaacaa 41117783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 49747879 - 49747795
Alignment:
Q  52 aaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    |||||||||||| |||||||||||  ||| ||||| |||||||||||| || ||||||||||||||||||||| |||||||||||    
T  49747879 aaaataaacaccataaaaaacacctctgaggacaacacccaccaaaattcatgtcaccacctaaaacagactctttcacgaaaac 49747795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 38636955 - 38637049
Alignment:
Q  44 aacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaacaa 138  Q
    |||||| ||||||||||||| |||| || ||||  || ||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  38636955 aacacctgaaaataaacaccttaaataaaacccccgaggacaacacccacgaaaatacatgtcaccacctaaaacaaactccttcacgaaaacaa 38637049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 39420746 - 39420851
Alignment:
Q  32 gtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacg 131  Q
    |||||||| || ||||||||||||| |||||| |||||||||| |||||  | || ||| ||||||||||||||||||| ||||||| ||||||| ||||    
T  39420746 gtatataggcggaacacccgaaaatgaacaccataaaaaacactcatgagcataacacc-accaaaatacacgtcaccatctaaaactgactcctacacg 39420844  T
Q  132 aaaacaa 138  Q
    | |||||    
T  39420845 agaacaa 39420851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 53823151 - 53823232
Alignment:
Q  51 gaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaa 135  Q
    ||||||||||||||||||||| |||| ||| || || |||||||||||||||||||| ||||   ||||||||||||||| ||||    
T  53823151 gaaaataaacaccctaaaaaatacccctgaggataacacccaccaaaatacacgtcatcacc---aacagactccttcacaaaaa 53823232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 16832709 - 16832831
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacca 110  Q
    |||||| |||| |||| ||||| |||||| || ||||||  |||||||||||||| |||||| | | ||| ||||| ||||||| ||||| |||||||||    
T  16832709 agaatacaaacaaaaggcgctgcatataggcggaacaccaaaaaataaacaccct-aaaaactctcctgaggacaacacccacc-aaataaacgtcacca 16832806  T
Q  111 cctaaaacagactccttcacgaaaa 135  Q
    ||||||||| | |||| ||||||||    
T  16832807 cctaaaacatattcctgcacgaaaa 16832831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 19311088 - 19311179
Alignment:
Q  44 aacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    |||| |||||| ||||||||||||||| | ||| ||  || || |||||||||||||||||||||||||  ||||||| ||||||||||||||    
T  19311088 aacatccgaaattaaacaccctaaaaa-ctcccctggggataacacccaccaaaatacacgtcaccaccataaacagattccttcacgaaaac 19311179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 22810926 - 22810972
Alignment:
Q  88 acccaccaaaatacacgtcaccacctaaaacagactccttcacgaaa 134  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  22810926 acccaccaaaatacacgtcacctcctaaaacagactgcttcacgaaa 22810972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 25753495 - 25753442
Alignment:
Q  82 gacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaa 135  Q
    ||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||    
T  25753495 gacaacacccaccaaaatacaagtcatcacctaaaacaaactccttcacgaaaa 25753442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 28967265 - 28967206
Alignment:
Q  13 aatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaac 72  Q
    |||| |||| |||| |||||||||||| || |||||| ||||||||||||||||||||||    
T  28967265 aatacaaacgaaaggcgctgtatataggcggaacacctgaaaataaacaccctaaaaaac 28967206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 52009184 - 52009118
Alignment:
Q  58 aacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactcc 125  Q
    ||||||||||||||||||| ||| |||||  ||||||||||  |||| ||||||||||||||||||||    
T  52009184 aacaccctaaaaaacacccctgaggacaac-cccaccaaaaatcacgccaccacctaaaacagactcc 52009118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 2061541 - 2061627
Alignment:
Q  31 tgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaa 117  Q
    ||||||||| || |||| | || ||||||||| |||||||| |||| ||| | ||| ||||| ||||||||| ||||||||||||||    
T  2061541 tgtatataggcggaacatctgataataaacacactaaaaaatacccctgagggcaacacccatcaaaatacaagtcaccacctaaaa 2061627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 11395110 - 11395012
Alignment:
Q  248 ttttatattatgtctaactcatccttataaaatcgccttgttagatgagtaatgtcactctttataaact-attttagactttatcgcttttcaatgtg 345  Q
    |||||||||  |||||||||||||||  |||| || ||||| || |||| ||||||||||||||||||||  ||| |||| ||||| || |||||||||    
T  11395110 ttttatattgagtctaactcatccttcaaaaaccgacttgtaagttgaggaatgtcactctttataaactcgtttcagaccttatcactattcaatgtg 11395012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 11404837 - 11404739
Alignment:
Q  248 ttttatattatgtctaactcatccttataaaatcgccttgttagatgagtaatgtcactctttataaact-attttagactttatcgcttttcaatgtg 345  Q
    |||||||||  |||||||||||||||  |||| || ||||| || |||| ||||||||||||||||||||  ||| |||| ||||| || |||||||||    
T  11404837 ttttatattgagtctaactcatccttcaaaaaccgacttgtaagttgaggaatgtcactctttataaactcgtttcagaccttatcactattcaatgtg 11404739  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 48098696 - 48098645
Alignment:
Q  13 aatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccc 64  Q
    |||| |||| |||||||| |||||||| || |||||||||||||||||||||    
T  48098696 aatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacaccc 48098645  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 42719478 - 42719437
Alignment:
Q  94 caaaatacacgtcaccacctaaaacagactccttcacgaaaa 135  Q
    ||||| ||| |||||||||||||| |||||||||||||||||    
T  42719478 caaaaaacatgtcaccacctaaaatagactccttcacgaaaa 42719437  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 49528387 - 49528346
Alignment:
Q  88 acccaccaaaatacacgtcaccacctaaaacagactccttca 129  Q
    ||||||||||| |||||||| ||||||||| |||||||||||    
T  49528387 acccaccaaaaaacacgtcatcacctaaaatagactccttca 49528346  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 15120291 - 15120415
Alignment:
Q  11 agaatataaactaaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcacca 110  Q
    |||||| ||||||||||||  |||| ||| |  |||| | || |||||||||||||||||||| |||||| ||||| | |||||||||||||| ||||||    
T  15120291 agaatacaaactaaagacgacgtatgtaggcagaacatctgacaataaacaccctaaaaaacatccatgaggacaacatccaccaaaatacacatcacca 15120390  T
Q  111 cctaaaacagactccttcacgaaaa 135  Q
    |||||||||||||| ||||| ||||    
T  15120391 cctaaaacagactcattcacaaaaa 15120415  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 6860426 - 6860317
Alignment:
Q  10 aagaatataaactaaagacgctgtatataga--cgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtca 107  Q
    ||||||| |||| |||||||| ||||||||   || ||||||| ||||||||||||||||||| |||| |||  |||||  ||||| |||||||||||||    
T  6860426 aagaatacaaacaaaagacgccgtatataggggcggaacacccaaaaataaacaccctaaaaa-cacctatgcggacaac-cccacaaaaatacacgtca 6860329  T
Q  108 ccacctaaaaca 119  Q
     |||||||||||    
T  6860328 tcacctaaaaca 6860317  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 17278249 - 17278313
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaa 134  Q
    ||||||||||  ||||| ||||||||||||| || | |||||||||| |||||||||||||||||    
T  17278249 aacacccatgcggacaacacccaccaaaataaacattaccacctaaatcagactccttcacgaaa 17278313  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 5607676 - 5607785
Alignment:
Q  23 aaagacgctgtatatagacgaaacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagac 122  Q
    ||||||| | ||||||||||||||| | |||||||||||  || |||||||||| |||  |||| |||||| | ||||||  | |||| |||||||||||    
T  5607676 aaagacgttatatatagacgaaacatctgaaaataaaca-tcttaaaaacacccctgaaaacaacacccactataatacaaattaccatctaaaacagac 5607774  T
Q  123 tccttcacgaa 133  Q
    | |||||||||    
T  5607775 tacttcacgaa 5607785  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 32935102 - 32935156
Alignment:
Q  82 gacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    ||||| ||||||||||||| ||  |||||||||||| ||||||||| ||||||||    
T  32935102 gacaacacccaccaaaataaacaccaccacctaaaatagactccttaacgaaaac 32935156  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 16180674 - 16180727
Alignment:
Q  81 tgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaa 134  Q
    |||||| | ||||||||||| || |||||||||||||||||| |||||| ||||    
T  16180674 tgacaacatccaccaaaataaacatcaccacctaaaacagaccccttcaagaaa 16180727  T

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Target: scaffold1384 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 1339 - 1476
Alignment:
Q  10 aagaatataaactaaagacgctgtatatagacgaaacacccgaaaa-taaacaccctaaaaaacaccc---atgatgacaatacccaccaaaatacacgt 105  Q
    |||| ||||||| |||| ||| |||||||| |  |||||||||||| |||||||| ||||||||||||   | ||  |||| |||||| |||||||||||    
T  1339 aagagtataaacaaaaggcgccgtatataggcagaacacccgaaaaataaacaccataaaaaacacccctaaggacaacaaaacccacaaaaatacacgt 1438  T
Q  106 caccacctaaaacagactccttcacgaaaacaaacact 143  Q
    ||||||||||||| ||||||| ||||| ||||| ||||    
T  1439 caccacctaaaactgactcctacacgagaacaaccact 1476  T

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Target: scaffold0063 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 58487 - 58396
Alignment:
Q  44 aacacccgaaaataaacaccctaaaaaacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 136  Q
    ||||||| |||||||| |||||||||| |||||||||  |||  | |  ||||| ||||| |||||||| |||||||||||||||||||||||    
T  58487 aacacccaaaaataaataccctaaaaa-cacccatgagaacaccatcagccaaagtacacatcaccaccaaaaacagactccttcacgaaaac 58396  T

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Target: scaffold1613 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 782 - 843
Alignment:
Q  70 aacacccatgatgacaatacccaccaaaatacacgtcaccacctaaaacagactccttcacg 131  Q
    ||||||||||| ||||| |  |||||||||| || |||||||||||||||||||| ||||||    
T  782 aacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttcacg 843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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