View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868_low_9 (Length: 361)
Name: NF4868_low_9
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 35410058 - 35409716
Alignment:
| Q |
1 |
ttattgaagattatccttatgcggctgatggactcctcatatggactagtatagagaagttggtcaggacctatgtgaaccattactacaaagatttgaa |
100 |
Q |
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| T |
35410058 |
ttattgaagattatccttatgcggctgatggactcctcatatggtctagtatagagaagttggtcaggacctatgtgaaccattactacaaagatttgaa |
35409959 |
T |
|
| Q |
101 |
tgccgtttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctgatcataaaaatgctacctggtggcctaaactaaac |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409958 |
tgccatttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctgatcataaaaatgctacctggtggcctaaactaaac |
35409859 |
T |
|
| Q |
201 |
acccctgaggatctcatctccttgcttaccaccattatctggactgtatcagcgcaacatgctgtcttgaacttcagtcaatacccctatggtggatatg |
300 |
Q |
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| T |
35409858 |
acccctgaggatctcatctccttgcttaccaccattatctggactgtatcagcgcaacatgctgtcttgaacttcagtcaatacccctatggtggatatg |
35409759 |
T |
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| Q |
301 |
ttccaatccggccacaattaatgcgaaaattaattcctaatga |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409758 |
ttccaatccggccacaattaatgcgaaaattaattcctaatga |
35409716 |
T |
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