View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4869-Insertion-12 (Length: 278)

Name: NF4869-Insertion-12
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4869-Insertion-12
NF4869-Insertion-12
[»] chr8 (9 HSPs)
chr8 (106-278)||(4030175-4030347)
chr8 (51-107)||(4030387-4030443)
chr8 (8-55)||(4031577-4031624)
chr8 (178-262)||(15349463-15349547)
chr8 (8-61)||(4962161-4962217)
chr8 (8-66)||(15349246-15349304)
chr8 (179-224)||(12195893-12195938)
chr8 (179-224)||(12440321-12440366)
chr8 (110-150)||(15349389-15349429)
[»] chr2 (2 HSPs)
chr2 (106-277)||(29350924-29351095)
chr2 (52-107)||(29350829-29350884)
[»] chr3 (6 HSPs)
chr3 (8-94)||(11005540-11005626)
chr3 (8-93)||(11024116-11024201)
chr3 (8-93)||(11015104-11015189)
chr3 (113-242)||(47451323-47451452)
chr3 (8-82)||(47451524-47451598)
chr3 (185-278)||(11014884-11014974)
[»] chr4 (56 HSPs)
chr4 (8-82)||(7790443-7790517)
chr4 (175-265)||(45384290-45384380)
chr4 (8-82)||(48147337-48147411)
chr4 (8-82)||(49038502-49038576)
chr4 (182-265)||(45365620-45365703)
chr4 (8-79)||(45371701-45371772)
chr4 (198-277)||(48871154-48871233)
chr4 (198-277)||(48876458-48876537)
chr4 (198-277)||(48886840-48886919)
chr4 (8-82)||(49043792-49043866)
chr4 (8-76)||(48864398-48864466)
chr4 (179-277)||(7237138-7237235)
chr4 (8-66)||(48853044-48853102)
chr4 (10-82)||(7771760-7771832)
chr4 (8-83)||(48156052-48156127)
chr4 (8-82)||(7908665-7908739)
chr4 (173-271)||(48155817-48155915)
chr4 (10-63)||(7237386-7237439)
chr4 (15-64)||(37826632-37826681)
chr4 (8-76)||(7813840-7813908)
chr4 (8-75)||(7773456-7773523)
chr4 (184-271)||(7801217-7801303)
chr4 (184-271)||(7823549-7823635)
chr4 (8-97)||(48903318-48903404)
chr4 (8-66)||(7766005-7766063)
chr4 (8-66)||(7878746-7878804)
chr4 (8-82)||(45365844-45365918)
chr4 (8-66)||(45384532-45384590)
chr4 (184-245)||(7908876-7908937)
chr4 (8-85)||(48870923-48871000)
chr4 (8-85)||(48876227-48876304)
chr4 (8-76)||(7801000-7801068)
chr4 (192-272)||(45371464-45371544)
chr4 (8-84)||(48886609-48886685)
chr4 (184-251)||(7814057-7814124)
chr4 (190-273)||(37826385-37826468)
chr4 (8-66)||(7786827-7786885)
chr4 (193-251)||(48863848-48863906)
chr4 (113-271)||(48903461-48903619)
chr4 (201-271)||(49040552-49040622)
chr4 (8-82)||(49048179-49048253)
chr4 (184-277)||(7787074-7787167)
chr4 (113-153)||(45371589-45371629)
chr4 (20-80)||(48735037-48735097)
chr4 (12-64)||(50666682-50666734)
chr4 (190-269)||(7790660-7790739)
chr4 (191-262)||(48147116-48147187)
chr4 (8-55)||(50672861-50672908)
chr4 (189-259)||(7771974-7772044)
chr4 (8-54)||(48861651-48861697)
chr4 (8-97)||(48899103-48899192)
chr4 (189-274)||(50673395-50673480)
chr4 (106-142)||(7766180-7766216)
chr4 (106-142)||(7787002-7787038)
chr4 (8-76)||(7823332-7823400)
chr4 (113-149)||(49043684-49043720)
[»] chr5 (9 HSPs)
chr5 (198-277)||(9120357-9120439)
chr5 (8-91)||(9120126-9120209)
chr5 (11-66)||(42561973-42562028)
chr5 (9-80)||(29696600-29696671)
chr5 (8-97)||(29688492-29688581)
chr5 (120-262)||(29688642-29688787)
chr5 (8-49)||(179421-179462)
chr5 (113-149)||(9120272-9120308)
chr5 (234-278)||(29696869-29696913)
[»] chr6 (4 HSPs)
chr6 (8-82)||(21016184-21016258)
chr6 (12-52)||(14197337-14197377)
chr6 (176-259)||(21016393-21016476)
chr6 (9-66)||(21979268-21979325)
[»] chr1 (8 HSPs)
chr1 (192-269)||(24340999-24341076)
chr1 (192-269)||(24353364-24353441)
chr1 (11-66)||(24367531-24367586)
chr1 (11-66)||(24416144-24416199)
chr1 (11-64)||(24310582-24310635)
chr1 (14-66)||(24323139-24323191)
chr1 (14-66)||(24340780-24340832)
chr1 (14-66)||(24353145-24353197)
[»] chr7 (1 HSPs)
chr7 (8-66)||(48884187-48884245)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 106 - 278
Target Start/End: Complemental strand, 4030347 - 4030175
Alignment:
Q  106 gtactgaattggtgaagtatgatgacaaaggacagttgctagagcatcgctgctattacgatgatggatttggatctcaagtggtcatgtacacagagtc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||    
T  4030347 gtactgaattggtgaagtatgatgacaaaggacagttgctagagcatcgctgctattacaatgatggatttggatctcaagtgaccatgtacacagagtc 4030248  T
Q  206 tctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaag 278  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4030247 tctgctttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgagtttttgaag 4030175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 4030443 - 4030387
Alignment:
Q  51 ctaagactcttgttctgtctattgatggcatttccattaagtactttgccccaatgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4030443 ctaagactcttgttctgtctattgatggcatttccattaagtacttttccccaatgt 4030387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 4031624 - 4031577
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaag 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4031624 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaag 4031577  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 15349463 - 15349547
Alignment:
Q  178 gatctcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaa 262  Q
    |||| |||||||  ||||| |||||||||||| |||||||||||||| | |||||||| |||||||| || ||| ||||||||||    
T  15349463 gatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 15349547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 4962217 - 4962161
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcat---tcgtcttggactaagactctt 61  Q
    ||||||||||| ||||||||||||||| |||||   ||||| |||||||||||||||    
T  4962217 gaaatatgggtgatgaaagaatacaaactgcattcgtcgtcgtggactaagactctt 4962161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 15349246 - 15349304
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    ||||||||||| ||||||||||||||| || | || |||||||| |||| |||||||||    
T  15349246 gaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttct 15349304  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 12195893 - 12195938
Alignment:
Q  179 atctcaagtggtcatgtacacagagtctctgatttcactccctggt 224  Q
    |||| |||||| |||||| |||||||||||| ||||||||||||||    
T  12195893 atctgaagtggccatgtatacagagtctctgctttcactccctggt 12195938  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 12440321 - 12440366
Alignment:
Q  179 atctcaagtggtcatgtacacagagtctctgatttcactccctggt 224  Q
    |||| |||||| |||||| |||||||||||| ||||||||||||||    
T  12440321 atctgaagtggccatgtatacagagtctctgctttcactccctggt 12440366  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 15349389 - 15349429
Alignment:
Q  110 tgaattggtgaagtatgatgacaaaggacagttgctagagc 150  Q
    |||||||||||||||||||||||| || |||||| ||||||    
T  15349389 tgaattggtgaagtatgatgacaatgggcagttgttagagc 15349429  T

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Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 106 - 277
Target Start/End: Original strand, 29350924 - 29351095
Alignment:
Q  106 gtactgaattggtgaagtatgatgacaaaggacagttgctagagcatcgctgctattacgatgatggatttggatctcaagtggtcatgtacacagagtc 205  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||| ||||||    
T  29350924 gtactgaattggtgaagtattatgacaaaggacagttgctagagcatcgctgctattacaatgatggatgtggatccgaagtggtcatgtacagagagtc 29351023  T
Q  206 tctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaa 277  Q
    | || |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29351024 tatgctttcactccccggtgacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttgtgaa 29351095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 29350829 - 29350884
Alignment:
Q  52 taagactcttgttctgtctattgatggcatttccattaagtactttgccccaatgt 107  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  29350829 taagactcttgttctgtctattgatggcatttccaataagtattttgccccaatgt 29350884  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 11005626 - 11005540
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatttccattaagtac 94  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||  | |||||||||||||||| |||| |||||    
T  11005626 gaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgtcttatctattgatggcatttgcattcagtac 11005540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 11024201 - 11024116
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatttccattaagta 93  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||  ||||| |||| ||||    
T  11024201 gaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcctatctattgattacatttacattcagta 11024116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 11015189 - 11015104
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatttccattaagta 93  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||| || |||||||||| |||||||||| ||||    
T  11015189 gaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgatgacatttccattgagta 11015104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 47451452 - 47451323
Alignment:
Q  113 attggtgaagtatgatgacaaaggacagttgctagagcatcgctgctattacgatgatggatttggatctcaagtggtcatgtacacagagtctctgatt 212  Q
    |||||| |||||| ||||||||||||||||| |||||||||| | |||||   | |||  || |||||  |||||||| |||||||||||||||||| ||    
T  47451452 attggttaagtataatgacaaaggacagttgttagagcatcgttcctattgtaacgatccatgtggatgccaagtggttatgtacacagagtctctgctt 47451353  T
Q  213 tcactccctggtaacaatgagcaagcttaa 242  Q
    ||||| || ||| |||||||||||||||||    
T  47451352 tcacttcccggtgacaatgagcaagcttaa 47451323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 47451598 - 47451524
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatt 82  Q
    ||||||||||| ||||||||||||||| |  |||||||||||   ||||||||||||||  ||||||||||||||    
T  47451598 gaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcctattgatggcatt 47451524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 11014974 - 11014884
Alignment:
Q  185 agtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaag 278  Q
    |||||| |||||||||||||||||| |||||||||||||| ||| || ||||  ||   |||||||| || | ||||||||||||||| |||||    
T  11014974 agtggttatgtacacagagtctctgctttcactccctggtgacagtgggcaatttt---aagatgacacagagaagaagaatgaggttgtgaag 11014884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 56)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 7790443 - 7790517
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatt 82  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||    
T  7790443 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatgccatt 7790517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 45384380 - 45384290
Alignment:
Q  175 ttggatctcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaa 265  Q
    ||||||||||||||| | |||| |||||||||||  |||||||  ||||| |||||||||||||||||||||||||| |||||||||||||    
T  45384380 ttggatctcaagtggccgtgtatacagagtctctcctttcactttctggtgacaatgagcaagcttaagaagatgacacaaacaagaagaa 45384290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 48147411 - 48147337
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatt 82  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||  | |||||||||||||||||    
T  48147411 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactcttaatttgtctattgatggcatt 48147337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 49038576 - 49038502
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatt 82  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||  |||||||    
T  49038576 gaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttctgtctattagtggcatt 49038502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 45365703 - 45365620
Alignment:
Q  182 tcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaa 265  Q
    |||||||| |||||| ||||||||| || | ||||| |||||| |||||||||||||||||||||||||| |||||||||||||    
T  45365703 tcaagtggccatgtatacagagtctttgctgtcacttcctggtgacaatgagcaagcttaagaagatgacacaaacaagaagaa 45365620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 45371772 - 45371701
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggc 79  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||  |||| ||||||    
T  45371772 gaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttcttcctatcgatggc 45371701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 48871154 - 48871233
Alignment:
Q  198 acagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaa 277  Q
    ||||||||| || |||||||||||||| |||||||||| | |||||||| |||| |||||||||||||||||||||||||    
T  48871154 acagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaa 48871233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 48876458 - 48876537
Alignment:
Q  198 acagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaa 277  Q
    ||||||||| || |||||||||||||| |||||||||| | |||||||| |||| |||||||||||||||||||||||||    
T  48876458 acagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaa 48876537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 48886840 - 48886919
Alignment:
Q  198 acagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaa 277  Q
    ||||||||| || |||||||||||||| |||||||||| | |||||||| |||| |||||||||||||||||||||||||    
T  48886840 acagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaa 48886919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 49043866 - 49043792
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatt 82  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| | |||||||||| ||||    
T  49043866 gaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcatt 49043792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 48864398 - 48864466
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgat 76  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||  ||||||||    
T  48864398 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcctattgat 48864466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 7237235 - 7237138
Alignment:
Q  179 atctcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaa 277  Q
    |||| |||| |||||||| |||||||||||| ||||||||| |||| |||||||||| |||||| |||||||| |||||||||| ||||| ||| ||||    
T  7237235 atctgaagttgtcatgtatacagagtctctgctttcactccttggtgacaatgagcatgcttaa-aagatgacacaaacaagaacaatgatgttgtgaa 7237138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 48853044 - 48853102
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||    
T  48853044 gaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttct 48853102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 7771760 - 7771832
Alignment:
Q  10 aatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatt 82  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||||| ||| |||||| ||||    
T  7771760 aatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttctttctgttgatgccatt 7771832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 48156127 - 48156052
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcattt 83  Q
    ||||||||||| ||||| ||||||||| ||||||| ||||||||||| |||||||| ||  |||||||||||||||    
T  48156127 gaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgtccttcctattgatggcattt 48156052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 7908665 - 7908739
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatt 82  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||| ||| ||||||||||| ||| |||||| ||||    
T  7908665 gaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttgatgccatt 7908739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 48155915 - 48155817
Alignment:
Q  173 atttggatctcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggt 271  Q
    ||||||||| ||||||  | |||| ||||||||| || |||||||||||||| |||||| |||||| ||||||||   | |||||||||||||||||||    
T  48155915 atttggatcccaagtgaccgtgtatacagagtctttgctttcactccctggtgacaatgtgcaagcctaagaagacatcacaaacaagaagaatgaggt 48155817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 7237439 - 7237386
Alignment:
Q  10 aatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgt 63  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||    
T  7237439 aatatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 37826681 - 37826632
Alignment:
Q  15 gggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgtt 64  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 7813840 - 7813908
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgat 76  Q
    |||||||||||  |||||||||||||| ||||||||||||||| ||| ||||||||||| ||| |||||    
T  7813840 gaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 7813908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 7773523 - 7773456
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattga 75  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| |||  |||||||||| ||| ||||    
T  7773523 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttctttctgttga 7773456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 7801217 - 7801303
Alignment:
Q  184 aagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggt 271  Q
    |||| |||||||| || ||||||||| |||||||||||||  |||||||| ||| |||||||||||||  ||||||||| ||||||||    
T  7801217 aagttgtcatgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa-aatgaggt 7801303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 7823549 - 7823635
Alignment:
Q  184 aagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggt 271  Q
    |||| |||||||| || ||||||||| |||||||||||||  |||||||| ||| |||||||||||||  ||||||||| ||||||||    
T  7823549 aagttgtcatgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa-aatgaggt 7823635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 48903318 - 48903404
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatttccattaagtacttt 97  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||| | |  ||||||||||||   |||||||||||  |||||||||    
T  48903318 gaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaaaatttgtgttctgtctat---tggcatttccaccaagtacttt 48903404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 7766005 - 7766063
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    ||||||||||| ||||||||||||||| || ||||||| ||||||||||| ||||||||    
T  7766005 gaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttct 7766063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 7878746 - 7878804
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||| ||| |||||||||||    
T  7878746 gaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttct 7878804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 45365918 - 45365844
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatt 82  Q
    ||||||||||| ||||||||||| ||| ||| |||||||||||| |||||||  |||||  ||||||||||||||    
T  45365918 gaaatatgggtgatgaaagaatataaagtgcgttcgtcttggacaaagactcacgttcttcctattgatggcatt 45365844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 45384590 - 45384532
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||| ||||||| ||||||    
T  45384590 gaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttct 45384532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 7908876 - 7908937
Alignment:
Q  184 aagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaa 245  Q
    |||| |||||||| || ||||||||| |||||||||||||| |||||||||||| |||||||    
T  7908876 aagttgtcatgtataccgagtctctgctttcactccctggtgacaatgagcaagtttaagaa 7908937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 48870923 - 48871000
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatttcc 85  Q
    ||||| ||||| ||||| ||||||||| || | ||||||||||| |||||||||||||| ||| |||||| |||||||    
T  48870923 gaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttcc 48871000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 48876227 - 48876304
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatttcc 85  Q
    ||||| ||||| ||||| ||||||||| || | ||||||||||| |||||||||||||| ||| |||||| |||||||    
T  48876227 gaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttcc 48876304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 7801000 - 7801068
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgat 76  Q
    |||||||||||  ||||||| |||||| ||||||||||||||| ||| ||||||||||| ||| |||||    
T  7801000 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 7801068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 45371544 - 45371464
Alignment:
Q  192 atgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggtt 272  Q
    ||||| |||||||||||| |||||||| || |  ||||||| |||||||||||||||| | || |||||| ||||||||||    
T  45371544 atgtatacagagtctctgctttcactctctagcgacaatgatcaagcttaagaagatggcacagacaagatgaatgaggtt 45371464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 48886609 - 48886685
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatttc 84  Q
    ||||| ||||| ||||| ||||||||| || | ||||||||||| |||||||||||||| ||| |||||| ||||||    
T  48886609 gaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttc 48886685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 7814057 - 7814124
Alignment:
Q  184 aagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgac 251  Q
    |||| |||||||| || ||||||||| |||||||||||||  |||||||| ||| |||||||||||||    
T  7814057 aagttgtcatgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgac 7814124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 37826468 - 37826385
Alignment:
Q  190 tcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttt 273  Q
    ||||||| || ||||||||| ||||| |||||| | ||   ||||||| ||||||||||||  |||||||||||||||||||||    
T  37826468 tcatgtatacggagtctctgctttcattccctgttgacggagagcaagtttaagaagatgatacaaacaagaagaatgaggttt 37826385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 7786827 - 7786885
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    ||||||||||| ||||||||||||||  ||||||  ||||||| |||||||||||||||    
T  7786827 gaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttct 7786885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 48863848 - 48863906
Alignment:
Q  193 tgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgac 251  Q
    |||| |||||||||||| |||||||||||  | ||| ||||||||||||||||||||||    
T  48863848 tgtatacagagtctctgctttcactccctaatgacagtgagcaagcttaagaagatgac 48863906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 271
Target Start/End: Original strand, 48903461 - 48903619
Alignment:
Q  113 attggtgaagtatgatgacaaaggacagttgctagagcatcgctgctattacgatgatggatttggatctcaagtggtcatgtacacagagtctctgatt 212  Q
    ||||||||||||| |||||||||||||||| |||||| ||| || |||     | |||  |  |||||| ||||||| | ||||   |||||||||  ||    
T  48903461 attggtgaagtataatgacaaaggacagttcctagagtatcactcctacggtaaggatctacatggatcccaagtggccttgtatgtagagtctctattt 48903560  T
Q  213 tcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggt 271  Q
    |||||||||||| ||| | |||||| ||||||||||| |  ||| ||||||||||||||    
T  48903561 tcactccctggtgacattaagcaagtttaagaagatggcataaataagaagaatgaggt 48903619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 49040622 - 49040552
Alignment:
Q  201 gagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggt 271  Q
    ||||||||| ||||||||||   | ||| | |||||||||||||||||| | |||||||||||||||||||    
T  49040622 gagtctctgctttcactccccaatgacagttagcaagcttaagaagatggcacaaacaagaagaatgaggt 49040552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 49048253 - 49048179
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatt 82  Q
    ||||||||||| |||||||| || ||| |||||||||| |||||||||||| ||||| | |||| ||||| ||||    
T  49048253 gaaatatgggtgatgaaagagtataaagtgcattcgtcatggactaagacttttgttttttctactgatgtcatt 49048179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 7787074 - 7787167
Alignment:
Q  184 aagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggttttgaa 277  Q
    |||| ||| |||| |||||||||||  |||||||| | ||| || ||||||| | ||||||||||||| || ||||||| ||||||||| ||||    
T  7787074 aagttgtcgtgtatacagagtctctactttcactctccggtgacgatgagcatgtttaagaagatgacacagacaagaacaatgaggttgtgaa 7787167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 45371629 - 45371589
Alignment:
Q  113 attggtgaagtatgatgacaaaggacagttgctagagcatc 153  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  45371629 attggtgaagtatgatgacaatggacagtttctagagcatc 45371589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 48735097 - 48735037
Alignment:
Q  20 atgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggca 80  Q
    ||||||||||||||| || |||||||||||||||| |||| || | ||||| |||||||||    
T  48735097 atgaaagaatacaaagtgaattcgtcttggactaaaactcatgctgtgtctgttgatggca 48735037  T

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Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 50666682 - 50666734
Alignment:
Q  12 tatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgtt 64  Q
    ||||||| ||| ||||||||||| ||||||| ||||||||||| |||||||||    
T  50666682 tatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 7790660 - 7790739
Alignment:
Q  190 tcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgag 269  Q
    ||||||| ||||| |||||| ||||||| | |||| |||||||||| | ||||||||||| | ||||||| || ||||||    
T  7790660 tcatgtatacagaatctctgctttcactacttggtgacaatgagcatgattaagaagatgtcacaaacaaaaacaatgag 7790739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 48147187 - 48147116
Alignment:
Q  191 catgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaa 262  Q
    |||||| || ||||||||| ||||||||||| || |||||| || | | |||||||||||| ||||||||||    
T  48147187 catgtatactgagtctctgctttcactccctagtgacaatgtgctaccctaagaagatgacacaaacaagaa 48147116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 50672861 - 50672908
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaag 55  Q
    ||||||||||| |||||| |||||||| |||||||||| |||||||||    
T  50672861 gaaatatgggtgatgaaacaatacaaattgcattcgtcgtggactaag 50672908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 7771974 - 7772044
Alignment:
Q  189 gtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaa 259  Q
    |||||||| ||||| |||||| ||||||| | |||| |||||||||| | ||||||||||| | |||||||    
T  7771974 gtcatgtatacagaatctctgctttcactacttggtgacaatgagcatgattaagaagatgtcacaaacaa 7772044  T

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Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 48861651 - 48861697
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaa 54  Q
    ||||||||||| || |||||||||||| |||||| ||||||||||||    
T  48861651 gaaatatgggtaataaaagaatacaaagtgcatttgtcttggactaa 48861697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 48899103 - 48899192
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatttccattaagtacttt 97  Q
    ||||||||||| ||||||||||| ||| |  | || ||||||||   ||||||||||||  |||||||||||||| ||| || |||||||    
T  48899103 gaaatatgggtgatgaaagaatataaagtaaaatcctcttggacagtgactcttgttcttcctattgatggcattcccactatgtacttt 48899192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 50673395 - 50673480
Alignment:
Q  189 gtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgaggtttt 274  Q
    |||||| | |||||||||||| ||||||||||   ||| |  ||||||| | | ||| |||||||||||| |||||||||||||||    
T  50673395 gtcatgcatacagagtctctgctttcactcccgcctaatagagagcaagttgatgaaaatgactcaaacatgaagaatgaggtttt 50673480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 7766180 - 7766216
Alignment:
Q  106 gtactgaattggtgaagtatgatgacaaaggacagtt 142  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  7766180 gtactaaattggtgaagtataatgacaaaggacagtt 7766216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 7787002 - 7787038
Alignment:
Q  106 gtactgaattggtgaagtatgatgacaaaggacagtt 142  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  7787002 gtactaaattggtgaagtataatgacaaaggacagtt 7787038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 7823332 - 7823400
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgat 76  Q
    |||||||||||  | ||||| |||||| |||||| |||||||| ||| ||||||||||| ||| |||||    
T  7823332 gaaatatgggtgtttaaagattacaaagtgcatttgtcttggaataaaactcttgttctttctgttgat 7823400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 49043720 - 49043684
Alignment:
Q  113 attggtgaagtatgatgacaaaggacagttgctagag 149  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  49043720 attggtgaagtatgatgaaaaaggacagtttctagag 49043684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 9120357 - 9120439
Alignment:
Q  198 acagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaac---aagaagaatgaggttttgaa 277  Q
    |||||||||||| |||||||||||||| ||||||| |||||||||| ||||||| |||||   ||||||||||||||||||||    
T  9120357 acagagtctctgctttcactccctggtgacaatgaacaagcttaaggagatgacacaaacaagaagaagaatgaggttttgaa 9120439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 9120126 - 9120209
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatttccattaag 91  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||  || ||||||||| |||||||||| |||||||||| ||||    
T  9120126 gaaatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgttttgtctattgacggcatttccactaag 9120209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 42562028 - 42561973
Alignment:
Q  11 atatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||    
T  42562028 atatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttct 42561973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 29696600 - 29696671
Alignment:
Q  9 aaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggca 80  Q
    |||||||||| ||| || |||||||  |||| || |||||||||||||||||||| |||||| |||||||||    
T  29696600 aaatatgggtgatggaaaaatacaatgtgcaatcctcttggactaagactcttgtcctgtcttttgatggca 29696671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 29688492 - 29688581
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatttccattaagtacttt 97  Q
    ||||||||||| |||||| |||||||  |||| ||||||||||| |||||||| ||||| ||| ||| || |||| ||||| | ||||||    
T  29688492 gaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctttcttttggtgacattcccattcactacttt 29688581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 262
Target Start/End: Original strand, 29688642 - 29688787
Alignment:
Q  120 aagtatgatgacaaaggacagttgctagagcatcgctgctattacgatgatggatttggatctcaagtggtcatgtacacagagtctctgatttcactcc 219  Q
    |||||| |||| ||||||||| |||||||||||| || ||| |  ||  ||| || |||||| | |||||| ||||| ||||| |||||| ||||||| |    
T  29688642 aagtataatgataaaggacagctgctagagcatcactcctactcggaccatgaatatggatccctagtggttatgtatacagaatctctgctttcacttc 29688741  T
Q  220 c---tggtaacaatgagcaagcttaagaagatgactcaaacaagaa 262  Q
    |   |||| ||| ||| || ||||||||||||||| || |||||||    
T  29688742 ctggtggtgacagtgatcaggcttaagaagatgacgcagacaagaa 29688787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 179421 - 179462
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttgg 49  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||    
T  179421 gaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 9120272 - 9120308
Alignment:
Q  113 attggtgaagtatgatgacaaaggacagttgctagag 149  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  9120272 attggtgaagtataatgacaaaggacagttgatagag 9120308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 29696869 - 29696913
Alignment:
Q  234 caagcttaagaagatgactcaaacaagaagaatgaggttttgaag 278  Q
    |||| |||||||||||||  || ||||||||||||||||||||||    
T  29696869 caagtttaagaagatgacagaaccaagaagaatgaggttttgaag 29696913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 21016184 - 21016258
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttctgtctattgatggcatt 82  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||  | | |||||||||| ||||    
T  21016184 gaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacatt 21016258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 14197377 - 14197337
Alignment:
Q  12 tatgggttatgaaagaatacaaaatgcattcgtcttggact 52  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  14197377 tatgggtgatgaaagaatacaaaatgcattcatcttggact 14197337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 21016393 - 21016476
Alignment:
Q  176 tggatctcaagtggtcatgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaa 259  Q
    |||||||| |||||   |||| ||||||||| || |||||||||||| | |||| || |||| ||||||||||||| |||||||    
T  21016393 tggatctcgagtggctgtgtatacagagtctttgctttcactccctgatgacaacgaccaagattaagaagatgacacaaacaa 21016476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 21979325 - 21979268
Alignment:
Q  9 aaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    |||||||||| ||||||||||||||| ||| ||| ||||||| |||||  ||||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgcgttcctcttggaataagaaacttgttct 21979268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 24340999 - 24341076
Alignment:
Q  192 atgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgag 269  Q
    ||||| || |||||| || ||||||||||| || |||||||| ||||||||||||||| | |||||||||||||||||    
T  24340999 atgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaagaatgag 24341076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 24353364 - 24353441
Alignment:
Q  192 atgtacacagagtctctgatttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaagaatgag 269  Q
    ||||| || |||||| || ||||||||||| || |||||||| ||||||||||||||| | |||||||||||||||||    
T  24353364 atgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaagaatgag 24353441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 24367531 - 24367586
Alignment:
Q  11 atatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgttct 24367586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 24416144 - 24416199
Alignment:
Q  11 atatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    |||||||| |||||||||||||||  ||| || ||||||||||| |||||||||||    
T  24416144 atatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 24310582 - 24310635
Alignment:
Q  11 atatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgtt 64  Q
    |||||||| ||||||||||||||| |||| || ||||||| ||| |||||||||    
T  24310582 atatgggtgatgaaagaatacaaagtgcagtcttcttggagtaaaactcttgtt 24310635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 24323139 - 24323191
Alignment:
Q  14 tgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    ||||| ||||||||||||||| |||| || |||| |||||| |||||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgttct 24323191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 24340780 - 24340832
Alignment:
Q  14 tgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    ||||| ||||||||||| ||| |||| || ||||||||||| |||||||||||    
T  24340780 tgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttct 24340832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 24353145 - 24353197
Alignment:
Q  14 tgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    ||||| ||||||||||| ||| |||| || ||||||||||| |||||||||||    
T  24353145 tgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttct 24353197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 48884187 - 48884245
Alignment:
Q  8 gaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaagactcttgttct 66  Q
    ||||||| ||| ||||||||||||||| |||||  ||||||||||||||||||||||||    
T  48884187 gaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttct 48884245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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