View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4869-Insertion-13 (Length: 176)
Name: NF4869-Insertion-13
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869-Insertion-13 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 34780739 - 34780908
Alignment:
| Q |
7 |
agaaacgacaagagattgtgaacaaaagaaaaaatggagaaatcgtagagggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaaga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34780739 |
agaaacgacaagagattgtgaacaaaagaaaaaatggagaaatcgtagatggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaaga |
34780838 |
T |
|
| Q |
107 |
tgagaccatggagatcaaaattacaaaggagcaaatcaagggtcttgttgtggtaagtttcttctgattg |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34780839 |
tgagaccatggagatcaaaattacaaaggaacaaatcaagggtcttgttgtggtaagtttcttctgattg |
34780908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 34763373 - 34763211
Alignment:
| Q |
7 |
agaaacgacaagagattgtgaacaaaagaaaaaatggagaaatcgtagagggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaaga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34763373 |
agaaacgacaagagattgtgaacaaaagaaaaaatggagaaatcgtagaaggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaaga |
34763274 |
T |
|
| Q |
107 |
tgagaccatggagatcaaaattacaaaggagcaaatcaagggtcttgttgtggtaagtttctt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
34763273 |
tgagaccatggagatcaaaattacaaaggaacaaatcaagggtcttgttgtggtgagtttctt |
34763211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 7e-63
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 34755397 - 34755228
Alignment:
| Q |
7 |
agaaacgacaagagattgtgaacaaaagaaaaaatggagaaatcgtagagggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||| ||| || || |
|
|
| T |
34755397 |
agaaacgacaagagattgtgaacaaaagaaaaaatggagaaatcatagagggcgagcagagtgtagtttttcttgatactttgcttgaatatgctcagga |
34755298 |
T |
|
| Q |
107 |
tgagaccatggagatcaaaattacaaaggagcaaatcaagggtcttgttgtggtaagtttcttctgattg |
176 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
34755297 |
tgagaccatggacatcaaaattaccaaggaacaaatcaagggtcttgttgtggtaagtttattctaattg |
34755228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University