View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4869-Insertion-2 (Length: 691)
Name: NF4869-Insertion-2
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 179 - 688
Target Start/End: Original strand, 8161112 - 8161621
Alignment:
| Q |
179 |
agacaatgcacaagttcaaaattcatggaggattgtagagcaaaagagataagggtaaaatgttgagtgctccttctacatatgtcgttattcgtcagaa |
278 |
Q |
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| T |
8161112 |
agacaatgcacaagttcaaaattcatggaggattgtagagcaaaatagataagggtaaaatgttgagtgctccttctacatatgtagttattcgtcaaaa |
8161211 |
T |
|
| Q |
279 |
tgatcttttactctttgaagacgatgttgatgataaagtgaagtaatgcgagactttggatcaagggagaatatgttatgtcaaagtagatattcatcca |
378 |
Q |
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| T |
8161212 |
taatcttttactctttgaagacgatgttgatgataaagtgaagtaatgcgaaactttggatcaagggagaatatgttatgtcaaagtagatattcatcca |
8161311 |
T |
|
| Q |
379 |
aaataccacattgaagagttattataaatatgaagagttaatttgaattttctttaccacaactactttagtctattgggtgtactagacgcttgcttag |
478 |
Q |
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| T |
8161312 |
aagtaccacattgaagagttattataaatatgaagagttaatttgaattttctttaccacaactactttagtctattgggtgtactagacgcttgcttag |
8161411 |
T |
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| Q |
479 |
ttgtttgtca-gagtgaatttacaatttttccccacaaaatttttagttgagagagtttgcaagtctgtaaaaattacattagtagttgatggggtttcc |
577 |
Q |
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| T |
8161412 |
ttgtttgtcatgagtgaattttcaatttttccccacaaaatttttagttgagagagtttgcaagtctgtaaaaattacattagtagttgatggggtttcc |
8161511 |
T |
|
| Q |
578 |
gattttgtttctgcaaaaattgtatgataggatttgtaattttatccttgtaagaattgcaagttgagtattaaaaattttgttcgaaaattgaggatgt |
677 |
Q |
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| T |
8161512 |
gattttgtttctgc-aaaattgtatgataggatttgtaattttatccttgtaagaattgcaagttgagtattaaaaattttgttcaaaaattgtggatgt |
8161610 |
T |
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| Q |
678 |
atttactagtt |
688 |
Q |
| |
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||||||||||| |
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| T |
8161611 |
atttactagtt |
8161621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 8156263 - 8156442
Alignment:
| Q |
7 |
acgacattcaatatttcctttcttagtgtaatgttnnnnnnntaaaattgcactttgtaaaatcgggattatatttgctagtttccatcttattcttttc |
106 |
Q |
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| T |
8156263 |
acgacattcaatatttcctttcgtagtataatgttaaaaaaatacaattgcactttgtaaaatcgggattatatttgctagtttccatcttattcttttt |
8156362 |
T |
|
| Q |
107 |
taaatgcatgtttagcaacatttgagattgatgcttctttgtttgatgagagaatgcatttctccgaccttaagacaatg |
186 |
Q |
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| T |
8156363 |
taaatgcatgtttagcaacatttgagattgatgcttctttgtatgatgagagaatgcatttctccgaccttaagacaatg |
8156442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 459
Target Start/End: Complemental strand, 9687577 - 9687519
Alignment:
| Q |
400 |
ttataaatatgaagagttaatttgaattttctttaccacaactactttagtctattgggt |
459 |
Q |
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| T |
9687577 |
ttataaatatgaagagttagttt-aattttctttaccacaacagctctagtcttttgggt |
9687519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 434
Target Start/End: Complemental strand, 36071608 - 36071571
Alignment:
| Q |
397 |
ttattataaatatgaagagttaatttgaattttcttta |
434 |
Q |
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| T |
36071608 |
ttattataaatatgaagagttaatttgagtttttttta |
36071571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 10500459 - 10500379
Alignment:
| Q |
284 |
ttttactctttgaagacgatgttgatgataaagtgaagtaatgcgagactttggatcaagggagaatatgttatgtcaaag |
364 |
Q |
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|||||| ||||||||| || |||||| | | ||||||| || |||| ||||||| ||||||| |||||||||||||||| |
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| T |
10500459 |
ttttaccctttgaagatgaagttgatcacatagtgaagaaacatgagaatttggatgaagggaggatatgttatgtcaaag |
10500379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 32107857 - 32107913
Alignment:
| Q |
394 |
gagttattataaatatgaagagttaatttgaattttctttaccacaactactttagt |
450 |
Q |
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| T |
32107857 |
gagttattataaatatgaagggttggtttgagttttctttaccaaaacaactctagt |
32107913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 52349141 - 52349105
Alignment:
| Q |
396 |
gttattataaatatgaagagttaatttgaattttctt |
432 |
Q |
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| T |
52349141 |
gttattataaatatggagagttaatttgagttttctt |
52349105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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