View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4869-Insertion-3 (Length: 634)

Name: NF4869-Insertion-3
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4869-Insertion-3
NF4869-Insertion-3
[»] chr4 (1 HSPs)
chr4 (8-634)||(46350117-46350746)


Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 634
Target Start/End: Original strand, 46350117 - 46350746
Alignment:
Q  8 gtagtaagcaccaatcaaaggttagtctttgcctttggnnnnnnngacattggatgatttgttaatccttgctttaacttacgtcggaaagaagtttcct 107  Q
    |||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46350117 gtagtaagcaccaatcaaaggtcagtctttgcctttggtttttttgacattggatgatttgttaatccttgctttaacttacgtcggaaagaagtttcct 46350216  T
Q  108 aatgaaacaaaatgatgctagccttgctagatgcgaatcccacataaatgcattgaagcacaatttccacttttagcaaaaaactttattgttgtttgat 207  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46350217 aatgaaacaaaatgatgctagccttgctagatgtgaatcccacataaatgcattgaagcacaatttccacttttagcaaaaaacttt-ttgttgtttgat 46350315  T
Q  208 tttattatatcgtaataaaataaatagactatatatgggtgatcatctttgtcatatcatgaaaatattttgaaaattgctataatattaacatgactat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46350316 tttattatatcgtaataaaataaatagactatatatgggtgatcaaatttgtcatatcatgaaaatattttgaaaatagctataatattaacatgactat 46350415  T
Q  308 aaaacaaaaggtttgcgtttattttcgaatcatataatatgatattgtctgttttaatgttggccctgggatttatatttttaagtcttcatcatatcag 407  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46350416 aaaacagaaggtttgcgtttattttcgaatcatataatatgatattgtctgttttaatgttggccctgggatttatatttttatgtcttcatcatatcag 46350515  T
Q  408 ttaccacttgaaaactttttcaataagttttttataatggtaacttcag---nnnnnnnnnnccttccaattctgtcgtgaaaaagt-aacctttacagc 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||| ||||||||||||    
T  46350516 ttaccacttgaaaactttttcaataagttttttataatggtaacttcagtttttttttttttccttccaattctgtcgtgaaaaagtaaacctttacagc 46350615  T
Q  504 aaaatttccaattacaagaaaagtttaggaaaattaatttactgttttttaatttgtgtacacaaattttaaactgacagtcaatatgaaacagagagaa 603  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46350616 aaaatttccaattacaagaaaagtttagaaaaattaatttactgttttttaatttgtgtacacaaattttaaactgacagtcaatatgaaacagagagaa 46350715  T
Q  604 ttcaggaaactagaaataccttgtgcagtga 634  Q
    |||||||||||||||||||||| ||||||||    
T  46350716 ttcaggaaactagaaataccttatgcagtga 46350746  T

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