View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4869-Insertion-5 (Length: 572)
Name: NF4869-Insertion-5
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 8 - 572
Target Start/End: Original strand, 47076611 - 47077175
Alignment:
| Q |
8 |
gattcttccctggccaacttcccataataatgttacttccattgttaacatgataagcatacagcctaaaaaccccatcaaaatcaagagttgcacgata |
107 |
Q |
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| T |
47076611 |
gattcttccctggccaacttcccataataatgttacttccattgttaacatgataagcatacagcctaaaaaccccatcaaaatcaagagttgcacgata |
47076710 |
T |
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| Q |
108 |
aatagtctggtttccagtgttctgttggtcttcttcagtattacgcaaagtggtaatacggatagaatcactgctgtcattccagatctgcagtaaacct |
207 |
Q |
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| T |
47076711 |
aatagtctggtttccagtgttctgttggtcttcttcagtattacgcaaagtggtaatacggctagaatcactgctgtcattccagatctgcagtaaacct |
47076810 |
T |
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| Q |
208 |
gtactgttaaggtaaagatgatgtttgacattggcactaacagtatcagaggcccaataagaatcccaacctgtttttgttgtgtgtgctgggtacagaa |
307 |
Q |
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| T |
47076811 |
gtactgttaaggtaaagatgatgtttgacattggcactaacagtatcagaggtccaataagaatcccaacctgtttttgttgtgtatgctgggtacagaa |
47076910 |
T |
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| Q |
308 |
caagatttccatcaacctgcatgttgagttgaaaccttccggttgagtgattggtctctgataaactagaggacagttggcctccacaaggcagagattg |
407 |
Q |
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| T |
47076911 |
caagatttccatcaacctgcatgttgagttgaaaccttccggttgagtgattggtctctgataaactagaggacagttggcctccacaaggcagagattg |
47077010 |
T |
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| Q |
408 |
actctccaataaagtatcagtcgggtgatcgaaactctgccatatgatgctggaaatattattgttgtcatatagtacaaagttcccagaatcaagcatg |
507 |
Q |
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| T |
47077011 |
actctccaataaagtatcagtcgggtgatcgaaactctgccatatgatgctggaaatattatggttgtcatatagtacaaagttcccagaatcaagcatg |
47077110 |
T |
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| Q |
508 |
gaggcagaggaagctcttgtattagcattaacaataagcttctgttgtccctgttgatctgttag |
572 |
Q |
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| T |
47077111 |
gaggccgaggaagctcttgtattagcattaacaataagcttctgttgtccctgttgatctgttag |
47077175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 46 - 572
Target Start/End: Complemental strand, 47067678 - 47067149
Alignment:
| Q |
46 |
ccattgttaacatgataagcatacagcctaaaaaccccatcaaaatcaagagttgcacgataaatagtctggtttcc---agtgttctgttggtcttctt |
142 |
Q |
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| T |
47067678 |
ccattgttaacatgacgagcatgcagccgaaaaaccccatcaaaatcaagggttgcacgataaatagtctggtttccgccagtctcttgctggtcctcgt |
47067579 |
T |
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| Q |
143 |
cagtattacgcaaagtggtaatacggatagaatcactgctgtcattccagatctgcagtaaacctgtactgttaaggtaaagatgatgtttgacattggc |
242 |
Q |
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| T |
47067578 |
cagcatcattcaaaattttaataaggctagaatcactgctgtcatccaagatctgaagtaaacctgtacttttaaggtaaagatgatgtttgacattggc |
47067479 |
T |
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| Q |
243 |
actaacagtatcagaggcccaataagaatcccaacctgtttttgttgtgtgtgctgggtacagaacaagatttccatcaacctgcatgttgagttgaaac |
342 |
Q |
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| T |
47067478 |
actaacagtatcagaggcccaataagcatcccaacttgtttcagctatgtatgctggatacagaacaagatttccatcaacctgcatgttgagttgaaac |
47067379 |
T |
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| Q |
343 |
cttccggttgagtgattggtctctgataaactagaggacagttggcctccacaaggcagagattgactctccaataaagtatcagtcgggtgatcgaaac |
442 |
Q |
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| T |
47067378 |
cttccggttgagtgattggtctctgataaactagaggacagtttgcctccacaaggtagagattgactctccaatagagtatcagttgggtgatcgaaac |
47067279 |
T |
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| Q |
443 |
tctgccatatgatgctggaaatattattgttgtcatatagtacaaagttcccagaatcaagcatggaggcagaggaagctcttgtattagcattaacaat |
542 |
Q |
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| T |
47067278 |
tctgccatatgatgctggaaatattattgttgtcatatagtacaaagttcccagaatcaagcatggaggccgaggaagctcttgtattagcattaacaat |
47067179 |
T |
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| Q |
543 |
aagcttctgttgtccctgttgatctgttag |
572 |
Q |
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| T |
47067178 |
aagcttctgttgtccctgttgatctgttag |
47067149 |
T |
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