View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4869-Insertion-7 (Length: 320)

Name: NF4869-Insertion-7
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4869-Insertion-7
NF4869-Insertion-7
[»] chr7 (8 HSPs)
chr7 (5-320)||(32562532-32562847)
chr7 (17-274)||(5459397-5459652)
chr7 (37-168)||(4123020-4123150)
chr7 (267-320)||(32562159-32562212)
chr7 (70-190)||(4514208-4514328)
chr7 (124-190)||(21019822-21019888)
chr7 (283-316)||(19650499-19650532)
chr7 (125-190)||(39227766-39227831)
[»] chr4 (10 HSPs)
chr4 (10-315)||(20748140-20748443)
chr4 (32-216)||(16404374-16404559)
chr4 (10-209)||(17651280-17651480)
chr4 (102-313)||(17743551-17743757)
chr4 (33-160)||(39938421-39938547)
chr4 (146-193)||(6116088-6116135)
chr4 (17-166)||(23692500-23692648)
chr4 (71-217)||(16300977-16301122)
chr4 (33-114)||(21545953-21546034)
chr4 (137-186)||(35150531-35150580)
[»] chr8 (7 HSPs)
chr8 (74-313)||(12843051-12843288)
chr8 (17-210)||(10516817-10517010)
chr8 (10-127)||(20706627-20706743)
chr8 (10-184)||(35104098-35104272)
chr8 (134-208)||(18535293-18535368)
chr8 (158-197)||(24502648-24502687)
chr8 (283-315)||(15177576-15177608)
[»] chr1 (7 HSPs)
chr1 (37-273)||(34488093-34488327)
chr1 (48-217)||(17048213-17048382)
chr1 (17-191)||(11833206-11833378)
chr1 (121-189)||(12900632-12900700)
chr1 (18-61)||(40817403-40817446)
chr1 (89-160)||(12889337-12889407)
chr1 (45-163)||(36755289-36755406)
[»] chr2 (6 HSPs)
chr2 (17-208)||(29966507-29966699)
chr2 (12-163)||(18114603-18114753)
chr2 (39-189)||(30462607-30462756)
chr2 (17-135)||(16195375-16195493)
chr2 (21-189)||(21538820-21538987)
chr2 (243-312)||(18114825-18114894)
[»] chr6 (2 HSPs)
chr6 (24-189)||(14760801-14760966)
chr6 (173-268)||(33546283-33546375)
[»] chr5 (4 HSPs)
chr5 (37-272)||(25954549-25954781)
chr5 (17-115)||(16687561-16687658)
chr5 (126-190)||(11848679-11848743)
chr5 (122-190)||(22186035-22186103)
[»] chr3 (1 HSPs)
chr3 (138-184)||(2120540-2120586)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 5 - 320
Target Start/End: Complemental strand, 32562847 - 32562532
Alignment:
Q  5 acaaaagagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggtt 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  32562847 acaaaagagtccttgtttgaagattgataactcatcaaattctttcttgagaagttttgattcagatttgaaaactttgcttcaaatggataatgtcgtt 32562748  T
Q  105 gaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgattaaagaaga 204  Q
    |||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32562747 gaattgtactaggaatatcctttgtttcttatggaatcacctgttacattctctttgtcattaaagttctttgtttgtttctgcacatgattaaagaaga 32562648  T
Q  205 caaacaatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtcacttatattgttgatgtgtccatcagaacttg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  32562647 caaacaatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagccacctatattgttgatgtgtccatcataacttg 32562548  T
Q  305 cttccttcaaaacatg 320  Q
    ||||||||||||||||    
T  32562547 cttccttcaaaacatg 32562532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 5459652 - 5459397
Alignment:
Q  17 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 116  Q
    ||||||||||| || ||   |||||||||| |||||  |||| ||||| |||  |||||||||||||| || |||||||||||  ||||||| ||||||     
T  5459652 ttgtttgaagagtgttagtgcatcaaattcgtccttaggaagctttgaatcagttttgaaaactttgcctctaatggataatgatgttgaatagtactac 5459553  T
Q  117 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaacaatact 215  Q
      | |||||||||| ||  | ||||||||||||||||||||||||||| | || |||||||||||||| ||||| || | | || |||| ||||||||||    
T  5459552 ataggtcctttgttactggtagaatgatctgttacattctctttgccactgaatttctttgtttgtttttgcacgtggtcagaaaaagataaacaatact 5459453  T
Q  216 attagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtcac 274  Q
    || ||   || |||| ||||||| ||||| ||||||||||||||| | || ||||||||    
T  5459452 atcag---aattttgaaagcgacgtttctccaaaagaagacaaaattggtgagagtcac 5459397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 4123150 - 4123020
Alignment:
Q  37 catcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttat 136  Q
    ||||||||||||| |||||||| ||| || ||||||| || ||| ||| ||  ||||||||||| ||| ||||||| |||  | ||| ||||||||||||    
T  4123150 catcaaattcttcattgagaagctttcat-catattttaatactctgcctctgatggataatgtcgttaaattgtattagagaagtcatttgtttcttat 4123052  T
Q  137 ggaatgatctgttacattctctttgccattaa 168  Q
     ||||||||||||||||  |||||||||||||    
T  4123051 agaatgatctgttacatattctttgccattaa 4123020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 32562212 - 32562159
Alignment:
Q  267 agagtcacttatattgttgatgtgtccatcagaacttgcttccttcaaaacatg 320  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32562212 agagccacctatattgttgatgtgtccatcagaacttgcttccttcaaaacatg 32562159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 190
Target Start/End: Complemental strand, 4514328 - 4514208
Alignment:
Q  70 atttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaa 169  Q
    ||||||||||||||| |||| |||||||||| ||||||| ||| | | ||  || |||| ||| |||||||||||||| |||||| |||||||| || ||    
T  4514328 atttgaaaactttgcatcaattggataatgtcgttgaatagtatttgaaaaatcatttgcttcatatggaatgatctgctacattatctttgcctttgaa 4514229  T
Q  170 gttctttgtttgtttctgcac 190  Q
     || ||||||||||| |||||    
T  4514228 tttatttgtttgtttatgcac 4514208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 21019822 - 21019888
Alignment:
Q  124 ctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcac 190  Q
    ||||| |||| |||||||||| ||||||||||||||| || || || || |||||||||||| ||||    
T  21019822 ctttgcttctaatggaatgatttgttacattctctttccccttgaatttttttgtttgtttcagcac 21019888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Original strand, 19650499 - 19650532
Alignment:
Q  283 ttgatgtgtccatcagaacttgcttccttcaaaa 316  Q
    ||||||||||||||||||||||||| ||||||||    
T  19650499 ttgatgtgtccatcagaacttgctttcttcaaaa 19650532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 39227831 - 39227766
Alignment:
Q  125 tttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcac 190  Q
    ||||||||||||  |||||| |||||||||||| ||| | ||||  |||||||||| |||||||||    
T  39227831 tttgtttcttatataatgatatgttacattctccttgtctttaattttctttgtttatttctgcac 39227766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 20748140 - 20748443
Alignment:
Q  10 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 109  Q
    |||||| |||||||||||  || ||| |||||||||| | ||||||||| ||||| |||  ||||||||| |||  || |||||||||||| ||| |||     
T  20748140 agagtcgttgtttgaagagggccaacacatcaaattcgttcttgagaagctttgaatcaattttgaaaacgttgtctctaatggataatgtcgttaaata 20748239  T
Q  110 gtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaa 208  Q
    |||||||  |  ||||||| ||||||| ||||||| |||||||||||||||||| || || || ||||||||||| ||||| || ||| || ||||||||    
T  20748240 gtactagagaaatcctttgcttcttatcgaatgatgtgttacattctctttgccgttgaatttttttgtttgtttttgcacgtggttagaaaaagacaaa 20748339  T
Q  209 caatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtcacttatattgttgatgtgtccatcagaacttgcttc 308  Q
    || |||||  ||   ||||||| || | || || | ||| |||||||||||||||||||  ||||  ||   | ||||||||||| | ||||| ||||||    
T  20748340 cagtactaccag---aactttgaaaacaacgttccatcataagaagacaaaactagtcatggtcatctaggctattgatgtgtcctttagaacatgcttc 20748436  T
Q  309 cttcaaa 315  Q
    |||||||    
T  20748437 cttcaaa 20748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 16404559 - 16404374
Alignment:
Q  32 taactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgttt 131  Q
    |||| |||||||||| | ||||||||||||||| ||| ||||||||||||| | ||||||||| || || |||||||  || |||    || ||||| ||    
T  16404559 taacacatcaaattcgttcttgagaagttttgaatcagatttgaaaacttttcctcaaatggagaacgtcgttgaataatattagaggagttctttgctt 16404460  T
Q  132 cttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaacaatacta 216  Q
    ||||||||||||| ||||||| |||||||| |||| ||||| |||||||||||| |||| || | | ||||||||||||| |||||    
T  16404459 cttatggaatgatttgttacaatctctttgtcattgaagttatttgtttgtttcagcacgtggtcagaagaagacaaacagtacta 16404374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 17651480 - 17651280
Alignment:
Q  10 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 109  Q
    |||||| |||||||| | | || ||||||||||| |||| ||||| ||| |||  |||| |||||||||  || |||||| |||||||||| ||||| |     
T  17651480 agagtcgttgtttgatgctggccaactcatcaaaatctttcttgataagattttgttcaaatttgaaaatatttcttcaattggataatgtcgttgagta 17651381  T
Q  110 gtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaa 208  Q
    ||||| |  |  ||| ||| |||||||||||||||  |||||||||||||||| |||||| |||| || |||||||||||| || ||| |||||||||||    
T  17651380 gtacttgagaaatcccttgcttcttatggaatgatacgttacattctctttgctattaaatttctctgcttgtttctgcacgtggttagaagaagacaaa 17651281  T
Q  209 c 209  Q
    |    
T  17651280 c 17651280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 313
Target Start/End: Original strand, 17743551 - 17743757
Alignment:
Q  102 gttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aag 200  Q
    ||||||| ||||||| ||  | ||||||| ||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||| || | | |||    
T  17743551 gttgaatagtactagaaaaattctttgttacttgtggaatgatctgttacattctctttgtcattgaacttctttgtttgtttctgcacgtggtcataag 17743650  T
Q  201 aagacaaacaatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtcacttatattgttgatgtgtccatcagaa 300  Q
    |||||||| | ||||||    | | ||||| ||| |   || | | |||||||||||||| | |||||||||||  | |||| |||||||||| ||| ||    
T  17743651 aagacaaatagtactat---caaagctttgaaagag---ttccataaaaagaagacaaaattggtcagagtcacccaaattgctgatgtgtccttcaaaa 17743744  T
Q  301 cttgcttccttca 313  Q
    |||||||||||||    
T  17743745 cttgcttccttca 17743757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 39938421 - 39938547
Alignment:
Q  33 aactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtac-taggaatgtcctttgttt 131  Q
    |||||||||||||| ||||||||||| || ||  || ||||||||||||||| |||| || ||||||| ||||||| |||| | ||||  ||||||  ||    
T  39938421 aactcatcaaattcgtccttgagaagctt-gac-cagatttgaaaactttgcctcaattgtataatgtcgttgaatagtacattggaaaatccttttatt 39938518  T
Q  132 cttatggaatgatctgttacattctcttt 160  Q
    ||||  |||||||||||| ||||||||||    
T  39938519 cttaaagaatgatctgttgcattctcttt 39938547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 6116088 - 6116135
Alignment:
Q  146 tgttacattctctttgccattaaagttctttgtttgtttctgcacatg 193  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  6116088 tgttacattctctttgctattgaagttctttgtttgtttatgcacatg 6116135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 23692500 - 23692648
Alignment:
Q  17 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 116  Q
    ||||||||||||||| |||| ||||| ||  | ||||||||  |||||| || |||| |||  ||||| ||||||||||||||| ||| ||| ||||| |    
T  23692500 ttgtttgaagattgccaactaatcaagttaattcttgagaaactttgat-cagatttaaaatttttgcctcaaatggataatgtcgttcaatagtacttg 23692598  T
Q  117 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccatt 166  Q
        ||| |||| |||||| |||||||||||||||| ||| |||| ||||    
T  23692599 aggagtcttttgcttcttagggaatgatctgttacactctttttgtcatt 23692648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 217
Target Start/End: Complemental strand, 16301122 - 16300977
Alignment:
Q  71 tttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaag 170  Q
    ||||||||||| ||||| ||| |||||||| ||||||| ||||||   |  |||||| || | |||| |||||||| |||||||||||||| || | ||     
T  16301122 tttgaaaacttcgcttctaatagataatgtagttgaatagtactaaataaatccttttttacgtatgaaatgatctattacattctctttgtcaatgaa- 16301024  T
Q  171 ttctttgtttgtttctgcacatgatta-aagaagacaaacaatactat 217  Q
     | | |||||||||||||||||| | | ||||||||| || |||||||    
T  16301023 -tttatgtttgtttctgcacatggtcagaagaagacagacgatactat 16300977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 21546034 - 21545953
Alignment:
Q  33 aactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtact 114  Q
    ||||||||||| || ||||||||||  |||||||   ||||||||| ||||| |||| |||||||||| ||| ||| |||||    
T  21546034 aactcatcaaaatcgtccttgagaatctttgatttggatttgaaaattttgcctcaattggataatgtcgttaaatagtact 21545953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 35150580 - 35150531
Alignment:
Q  137 ggaatgatctgttacattctctttgccattaaagttctttgtttgtttct 186  Q
    ||||| || |||||||||||||||||| || ||||||||| |||||||||    
T  35150580 ggaatcatttgttacattctctttgcctttgaagttctttatttgtttct 35150531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 74 - 313
Target Start/End: Original strand, 12843051 - 12843288
Alignment:
Q  74 gaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttc 173  Q
    ||||| ||||| || |||||| ||||| ||||||| ||||||  ||| || |||| |||||  ||||| |||  ||||||||| ||||||||||||||||    
T  12843051 gaaaattttgcctctaatggacaatgtcgttgaatagtactataaatctcatttgcttctttaggaataatccattacattctatttgccattaaagttc 12843150  T
Q  174 tttgtttgtttctgcacatgatta-aagaagacaaacaatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtc 272  Q
    ||||||||||| |||| ||| | | |||||||||| ||||||||| ||   ||||||| ||||||  || ||||| |||||||||||||| |||| ||||    
T  12843151 tttgtttgtttttgcatatggtcagaagaagacaagcaatactatcag---aactttgaaagcgatgttgcttcagaagaagacaaaactggtcaaagtc 12843247  T
Q  273 acttatattgttgatgtgtccatcagaacttgcttccttca 313  Q
    ||  | ||||||||||||||  |||| ||||| || |||||    
T  12843248 acccaaattgttgatgtgtctttcagtacttgatttcttca 12843288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 10517010 - 10516817
Alignment:
Q  17 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 116  Q
    |||||||||| |||  ||||||||||| || ||||  ||||| ||||||| | |||||||| |||||| |||||||||||||||  ||||||  |||||     
T  10517010 ttgtttgaaggttgtcaactcatcaaaatcgtcctcaagaagctttgatttaaatttgaaa-ctttgcctcaaatggataatgtcattgaataatactat 10516912  T
Q  117 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaaca 210  Q
     || ||| |||  |||||||| |||||| ||||||||||||||||||||| ||||||| |||||| |||||||| || | | |||||||||||||    
T  10516911 aaaagtcattttcttcttatgaaatgatttgttacattctctttgccattgaagttctatgtttgcttctgcacgtggtcagaagaagacaaaca 10516817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 20706627 - 20706743
Alignment:
Q  10 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 109  Q
    |||||| ||||||||||| ||  | | |||||||||| || |||||||| ||||||  | ||||| ||||||||| || |||||||||||| |||||||     
T  20706627 agagtcgttgtttgaagagtgtcagcgcatcaaattcctctttgagaagctttgatgaa-atttgtaaactttgcctctaatggataatgtcgttgaata 20706725  T
Q  110 gtactaggaatgtccttt 127  Q
    ||||||| ||||||||||    
T  20706726 gtactagaaatgtccttt 20706743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 35104272 - 35104098
Alignment:
Q  10 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 109  Q
    |||| ||||| ||||||||||| ||||||||||| || | ||||||||| ||||||||| |||||  || ||||  |||||||||   | | |||||||     
T  35104272 agagcccttggttgaagattgccaactcatcaaagtcattcttgagaagctttgattcagatttg-gaattttgtctcaaatggaatctatcgttgaata 35104174  T
Q  110 gtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgcca-ttaaagttctttgtttgttt 184  Q
    |||| | ||  ||| ||||||| ||| | |||||| |||||||||||||||| || || ||||| |||||||||||    
T  35104173 gtaccaagagcgtcatttgttttttaggtaatgatatgttacattctctttgtcatttgaagttgtttgtttgttt 35104098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 18535293 - 18535368
Alignment:
Q  134 tatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaa 208  Q
    ||||||||||| ||||||||||| ||| || ||||| || ||||||||||||| ||||| |||| |||||||||||    
T  18535293 tatggaatgatttgttacattctttttacctttaaacttttttgtttgtttctacacattattagaagaagacaaa 18535368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 24502687 - 24502648
Alignment:
Q  158 tttgccattaaagttctttgtttgtttctgcacatgatta 197  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  24502687 tttgtcattaaagttctttgtttgtttctgcacatgatta 24502648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 15177608 - 15177576
Alignment:
Q  283 ttgatgtgtccatcagaacttgcttccttcaaa 315  Q
    ||||||||||||||||||||||||||| |||||    
T  15177608 ttgatgtgtccatcagaacttgcttccatcaaa 15177576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 273
Target Start/End: Original strand, 34488093 - 34488327
Alignment:
Q  37 catcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttat 136  Q
    |||||||||| | ||||||||||||| || || ||||||||||||||| || |||| |||| || ||||||| |||||||    |||||||| |||||      
T  34488093 catcaaattcgttcttgagaagttttaat-cagatttgaaaactttgcctctaatgaataaagtcgttgaatagtactagaggggtcctttgattctttg 34488191  T
Q  137 ggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgat--taaagaagacaaacaatactattagtataactttggaag 234  Q
     ||||||||  |||||||||||||| |||| ||||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||    |||||| ||     
T  34488192 tgaatgatccattacattctctttgtcattgaagttctttgtttgtttctgcacgtcgtcaaaaaaaagacaaacaatactatcag---cactttgaaaa 34488288  T
Q  235 cgacatttcttcaaaagaagacaaaactagtcagagtca 273  Q
    |||| || ||||| |||||||||||||| ||||||||||    
T  34488289 cgacgttccttcataagaagacaaaactggtcagagtca 34488327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 48 - 217
Target Start/End: Complemental strand, 17048382 - 17048213
Alignment:
Q  48 tccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctg 147  Q
    ||||||||||  ||||||||||||||||||||||| | | || || ||||||| ||| ||| ||||| |    ||||||||||||||| |||||||||||    
T  17048382 tccttgagaatatttgattcatatttgaaaactttaccttaattg-ataatgtcgttaaatagtacttgaggagtcctttgtttcttagggaatgatctg 17048284  T
Q  148 ttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaacaatactat 217  Q
    ||||||||||||||||||| ||  ||| ||||||||||| ||| || | | || |||||||||||||||||    
T  17048283 ttacattctctttgccattgaatatctatgtttgtttctacacgtggtcagaaaaagacaaacaatactat 17048213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 11833206 - 11833378
Alignment:
Q  17 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 116  Q
    |||||| |||| ||| ||| ||||| |||||||||| | ||| |||||| || |||||||||||| || |||||||||| |||| ||||||| ||||||     
T  11833206 ttgtttaaagagtgccaacacatcagattcttccttaaaaagctttgat-caaatttgaaaactt-gcctcaaatggattatgtcgttgaatggtactat 11833303  T
Q  117 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcaca 191  Q
        || ||||| |||||| |||||||| |||||||||||||||| |||| ||||||||||||| ||| ||||||    
T  11833304 atgagttctttgcttcttagggaatgatatgttacattctctttgtcattgaagttctttgtttatttttgcaca 11833378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 12900700 - 12900632
Alignment:
Q  121 gtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgca 189  Q
    |||||||| |||||  |||||||| ||||||||||||||| ||||| || |||||||||||||| ||||    
T  12900700 gtcctttgcttctttgggaatgatttgttacattctcttttccattgaaattctttgtttgtttttgca 12900632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 40817446 - 40817403
Alignment:
Q  18 tgtttgaagattgctaactcatcaaattcttccttgagaagttt 61  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  40817446 tgtttgaagattgctaactcatcaacttcatccttgagaagttt 40817403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 12889407 - 12889337
Alignment:
Q  89 aatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctcttt 160  Q
    |||||||||||| ||||||| ||| ||| | | ||||||| ||||| ||||||||| |||||||||||||||    
T  12889407 aatggataatgtcgttgaatagtattag-agtttcctttgcttcttttggaatgatttgttacattctcttt 12889337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 36755406 - 36755289
Alignment:
Q  45 tcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgat 144  Q
    |||||||||||||||||||| | | |||||||| ||||||||| ||||||| |    ||||||| |||||||   | || |||| ||||| |||||| ||    
T  36755406 tcttccttgagaagttttgaat-agatttgaaagctttgcttctaatggatgactatgttgaatagtactagaggtttcttttgcttcttttggaataat 36755308  T
Q  145 ctgttacattctctttgcc 163  Q
    ||||| |||||| ||||||    
T  36755307 ctgttgcattctatttgcc 36755289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 29966699 - 29966507
Alignment:
Q  17 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 116  Q
    ||||||||| ||| | ||||||||||| ||  | |||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |    
T  29966699 ttgtttgaatatttccaactcatcaaaatcacctttgagaagctttgattcatatttgaaaactttgcttcaattggataatgtcgttgaatagtactcg 29966600  T
Q  117 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaa 208  Q
      |  || |||| ||||||||||||||||  ||||||| |||||||  || || || |||||||| |||| ||| || ||| |||||||||||    
T  29966599 agaaatcatttgcttcttatggaatgatccattacattatctttgcgtttgaatttatttgtttgattctacacgtggttagaagaagacaaa 29966507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 18114603 - 18114753
Alignment:
Q  12 agtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgt 111  Q
    |||| ||||||||||||||| ||| |||||||||| ||||||||||| ||||| || |||||||||||||||| || |||||||| | | ||||||| ||    
T  18114603 agtcattgtttgaagattgccaacgcatcaaattcgtccttgagaagctttga-tcgtatttgaaaactttgcctctaatggatagtatcgttgaatagt 18114701  T
Q  112 actaggaatgtcctttgtttcttatggaatgatctgttacattctctttgcc 163  Q
    |||||   | || |||| ||||| |||||| ||||||| |||||| ||||||    
T  18114702 actagaggtttcttttgcttcttttggaataatctgttgcattctatttgcc 18114753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 189
Target Start/End: Original strand, 30462607 - 30462756
Alignment:
Q  39 tcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatgg 138  Q
    |||||||| ||||| ||||| |||||| ||||||||||| |||||| || |||||||||||| ||| ||| |||| || ||  || |||| |||||||      
T  30462607 tcaaattcatcctttagaagctttgat-catatttgaaagctttgcctctaatggataatgtcgttaaatagtacaagaaaaatcgtttgcttcttatat 30462705  T
Q  139 aatgatctgttacattctctttgccattaaagttctttgtttgtttctgca 189  Q
    |||||| ||||||||| ||||||||||| ||||||||| |||||| |||||    
T  30462706 aatgatttgttacattttctttgccattgaagttctttatttgttactgca 30462756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 16195493 - 16195375
Alignment:
Q  17 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 116  Q
    |||||||| |||| | ||||||||||| || ||||||||||| ||||||| | ||||||||  ||| | |||||| ||||||||  | ||||||| |||     
T  16195493 ttgtttgaggattaccaactcatcaaaatcatccttgagaagctttgatttagatttgaaattttttcctcaaattgataatgttttcgaattgttctat 16195394  T
Q  117 gaatgtcctttgtttctta 135  Q
    ||| ||| |||| ||||||    
T  16195393 gaaagtcatttgcttctta 16195375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 21538987 - 21538820
Alignment:
Q  21 ttgaagattgctaactcatcaaattcttccttgagaagttttgattcatattt-gaaaactttgcttcaaatggataatgtggttgaattgtac-tagga 118  Q
    ||||||||||| ||| |||||||||| | ||||||||| || ||| ||||||| ||||||||||| |||| |||||||| | ||||||| || | || ||    
T  21538987 ttgaagattgccaacacatcaaattcgttcttgagaagctt-gat-catattttgaaaactttgcctcaattggataatatcgttgaatagtgcttaaga 21538890  T
Q  119 atgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgca 189  Q
    |  ||||||| | | ||||||||||| ||||||||| |  ||||| || || |||||||||||||| ||||    
T  21538889 a-atcctttgctgcatatggaatgatttgttacatttttcttgcctttgaatttctttgtttgtttttgca 21538820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 18114825 - 18114894
Alignment:
Q  243 cttcaaaagaagacaaaactagtcagagtcacttatattgttgatgtgtccatcagaacttgcttccttc 312  Q
    ||| |||||||||||||||||| ||||||| |||| | || ||| |||||| |||||  |||||||||||    
T  18114825 ctttaaaagaagacaaaactaggcagagtctcttagaatgctgacgtgtccttcagatattgcttccttc 18114894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 14760801 - 14760966
Alignment:
Q  24 aagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtc 123  Q
    |||||||  ||||||||||| |||||||| | ||| ||||||||| |||| |||||||||| || | ||| |||||| ||||||| |||||||||   ||    
T  14760801 aagattgtcaactcatcaaaatcttccttcataagctttgattcagatttaaaaactttgcctcgattgggtaatgtcgttgaatagtactaggagaatc 14760900  T
Q  124 ctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgca 189  Q
    |||||  ||||| ||||| || ||||||||  | ||||||||||||||||||||| ||||| ||||    
T  14760901 ctttgcctcttaaggaataatttgttacatcatttttgccattaaagttctttgtatgtttttgca 14760966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 33546283 - 33546375
Alignment:
Q  173 ctttgtttgtttctgcacatgatta-aagaagacaaacaatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcag 268  Q
    ||||||||||||||||||||| | | ||||||||||||||||||    | ||||||| | | ||||| | ||||||||| |||| ||||||||||||    
T  33546283 ctttgtttgtttctgcacatggtcagaagaagacaaacaatact----gcataacttggaatgcgacgtctcttcaaaaaaagaaaaaactagtcag 33546375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 272
Target Start/End: Complemental strand, 25954781 - 25954549
Alignment:
Q  37 catcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttat 136  Q
    |||||| ||| || |||||||| |||||| || |||||||||||||||  | ||| ||||||||  ||||||  ||||||    |||||||| ||||| |    
T  25954781 catcaagttcgtcattgagaagctttgat-caaatttgaaaactttgccactaattgataatgtcattgaataatactagatgagtcctttgcttctttt 25954683  T
Q  137 ggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaacaatactattagtataactttggaagc 235  Q
     ||||||||||   |||||  |||||| || ||||||||||||| ||||||||||   | | ||||||||||||||||| ||    |||| |||| ||||    
T  25954682 agaatgatctggaccattccttttgcctttgaagttctttgtttatttctgcacaaagtcataagaagacaaacaatacaat---cataattttgaaagc 25954586  T
Q  236 gacatttcttcaaaagaagacaaaactagtcagagtc 272  Q
    |||||||||| | |||||||||||||| |||| ||||    
T  25954585 gacatttctttagaagaagacaaaactggtcatagtc 25954549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 16687658 - 16687561
Alignment:
Q  17 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtacta 115  Q
    ||||||||||||||  |||||||||||||| | ||| ||||| ||||| ||  ||||||||||||| | || |||||| |||||  |||||| ||||||    
T  16687658 ttgtttgaagattggaaactcatcaaattcatactttagaagctttga-tcggatttgaaaactttccctctaatggacaatgtcattgaatagtacta 16687561  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 11848743 - 11848679
Alignment:
Q  126 ttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcac 190  Q
    ||||||||||| ||||||  ||||||||| ||||| || || || |||||||||| |||||||||    
T  11848743 ttgtttcttatagaatgaggtgttacattatcttttcctttgaatttctttgtttttttctgcac 11848679  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 22186035 - 22186103
Alignment:
Q  122 tcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcac 190  Q
    ||||||| |||||||  |||||  |||||||||||||||| | || || | ||||||||||||||||||    
T  22186035 tcctttgcttcttataaaatgacatgttacattctctttgtctttgaattcctttgtttgtttctgcac 22186103  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 2120586 - 2120540
Alignment:
Q  138 gaatgatctgttacattctctttgccattaaagttctttgtttgttt 184  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||||    
T  2120586 gaatgatatgttacattctctttgtcattgaagttctttgtttgttt 2120540  T

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