View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4869-Insertion-8 (Length: 167)
Name: NF4869-Insertion-8
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869-Insertion-8 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 9e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 9e-81
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 28719691 - 28719532
Alignment:
| Q |
8 |
aaatctaacatatatatattagccaaagatttgctatcgtttagaactcgtatgaaattcaacaatattatacttcttttgagtttcccttttctgatat |
107 |
Q |
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| T |
28719691 |
aaatctaacatatatatattagccaaagatttgctatcgtttagaactcgtatgaaattcaacaatattatacttcttttgagtttcccttttctgataa |
28719592 |
T |
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| Q |
108 |
gtgaaagattagaaaataaaggatcttggtaaaataagaattaattcttatgattggtaa |
167 |
Q |
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| T |
28719591 |
gtgaaagattagaaaataaaggatcttggtaaaataagaattaactcttatgattggtaa |
28719532 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 28712345 - 28712267
Alignment:
| Q |
87 |
tgagtttcccttttctgatatgtgaaagattagaaaataaaggatcttggtaaaataagaattaattcttatgattggt |
165 |
Q |
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| T |
28712345 |
tgagtttctcttttatgatatgcaaaaggttagaaaataaaggatcttggtaaaataagaattaattcttatgattggt |
28712267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 28703621 - 28703486
Alignment:
| Q |
19 |
atatatattagccaaagatttgctatcgtttagaactcgtatgaaattcaacaatattatacttcttt--tgagtttcccttttctgatatgtgaaagat |
116 |
Q |
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| T |
28703621 |
atatatatcagctaaatatttgctataatctagaactcatatgaaattcaacaatattatacctctttcaacactttcccttttctcatatatg-aaggt |
28703523 |
T |
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| Q |
117 |
tagaaaataaaggatcttggtaaaataagaattaatt |
153 |
Q |
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| T |
28703522 |
ttgaaaataaaagatgttggtaaaataagaattaatt |
28703486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 11694275 - 11694307
Alignment:
| Q |
132 |
cttggtaaaataagaattaattcttatgattgg |
164 |
Q |
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| T |
11694275 |
cttggtaaaataagaataaattcttatgattgg |
11694307 |
T |
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