View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4869-Insertion-9 (Length: 179)
Name: NF4869-Insertion-9
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869-Insertion-9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 2e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 2e-84
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 40950118 - 40950291
Alignment:
| Q |
7 |
atcaccttagtctgggccgtctcaaccattagatcagtaaaacccttgttttaggcttcaatttttatttatttt-taactagtatacatgtatatgtaa |
105 |
Q |
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| T |
40950118 |
atcaccttagtctgggccgtctcaaccattagatcagtaaaacccttgttttaggcttcaattttattttattttttaactagtatacatgtatatgtaa |
40950217 |
T |
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| Q |
106 |
ttattactagtaataaggtagttgatattttcatgctaaactccacacatttggactatgtgggtatccctcta |
179 |
Q |
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| T |
40950218 |
ttattactagtaataaggtagttgatattttcatgctaaactccacacatttggactatgtgggtatccctcta |
40950291 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 23292385 - 23292424
Alignment:
| Q |
79 |
ttttaactagtatacatgtatatgtaattattactagtaa |
118 |
Q |
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| T |
23292385 |
ttttaactagtatacatgtttatgttattattactagtaa |
23292424 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 45208693 - 45208780
Alignment:
| Q |
21 |
ggccgtctcaaccattagatcagtaaaacccttgttttaggcttcaatttttatttatttttaactagtatacatgtatatgtaatta |
108 |
Q |
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| T |
45208693 |
ggccgtctcaaccattgggccagtaaagcccttgcttttggcctcaaattttaatttttattaactagtaaatatgtatatataatta |
45208780 |
T |
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