View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4869_high_13 (Length: 237)
Name: NF4869_high_13
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33951175 - 33951391
Alignment:
| Q |
1 |
gtttggattagcagtgtgttagacagaatcatgaaaacttgaaagaaaaaattacgctgccaccataattttgccaaattcaatttgattctaattaaac |
100 |
Q |
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| T |
33951175 |
gtttggattagcagtgtgttagacagaatcatgaaaacttgaaagaaaaaattacgctgccaccataattttgccaaattcaatttgattc----taaac |
33951270 |
T |
|
| Q |
101 |
atgaacttatacatgaattatatatatcattgccttagatggtactcaataatatatggatgnnnnnnnagtaaagaatggatggaaataaggacataag |
200 |
Q |
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| T |
33951271 |
atgaacttatacatgaattatatatatcattgccttagatggtactcaataatatatggatgtttttttagtaaagaatggatggaaataaggacataag |
33951370 |
T |
|
| Q |
201 |
aattttttcatataaatattt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
33951371 |
aattttttcatataaatattt |
33951391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33973770 - 33973986
Alignment:
| Q |
1 |
gtttggattagcagtgtgttagacagaatcatgaaaacttgaaagaaaaaattacgctgccaccataattttgccaaattcaatttgattctaattaaac |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33973770 |
gtttggattagcagtgtgttagacagaatcatgaaaacttgaaagaaaaaattacgctgccaccataattttgccaaattcaatttgattc----taaac |
33973865 |
T |
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| Q |
101 |
atgaacttatacatgaattatatatatcattgccttagatggtactcaataatatatggatgnnnnnnnagtaaagaatggatggaaataaggacataag |
200 |
Q |
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| T |
33973866 |
atgaacttatacatgaattatatatatcattgccttagatggtactcaataatatatggatgtttttttagtaaagaatggatggaaataaggacataag |
33973965 |
T |
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| Q |
201 |
aattttttcatataaatattt |
221 |
Q |
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| T |
33973966 |
aattttttcatataaatattt |
33973986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 33990659 - 33990749
Alignment:
| Q |
1 |
gtttggattagcagtgtgttagacagaatcatgaaaacttgaaagaaaaaattacgctgccaccataattttgccaaattcaatttgattctaa |
94 |
Q |
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|||||||||||| |||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||| |||||||| |||| |||||| |
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| T |
33990659 |
gtttggattagcggtgtgttagacataatcaaagaaacttgaaa---aaaattacactgccaccataattttgtcaaattcactttgtttctaa |
33990749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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