View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4869_high_15 (Length: 237)
Name: NF4869_high_15
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 33950761 - 33950530
Alignment:
| Q |
1 |
ctggggtgatccaaaagatcaatgtattgctttatttcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttct |
100 |
Q |
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||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950761 |
ctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttct |
33950662 |
T |
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| Q |
101 |
tttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950661 |
tttgtgctttttgaagaatttgagatattttgttcaagacatcattaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaattt |
33950562 |
T |
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| Q |
201 |
gagattccttcttctgtttttgcctgtctgtg |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33950561 |
gagattccttcttctgtttttgcctgtctgtg |
33950530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 99 - 201
Target Start/End: Complemental strand, 33959349 - 33959247
Alignment:
| Q |
99 |
cttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
198 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33959349 |
ctttcgtgctttttgaagtatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
33959250 |
T |
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| Q |
199 |
ttg |
201 |
Q |
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||| |
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| T |
33959249 |
ttg |
33959247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 33990237 - 33990013
Alignment:
| Q |
1 |
ctggggtgatccaaaagatcaatgtattgctttatttcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttct |
100 |
Q |
| |
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||||| ||||||||| | ||| ||||||||||||| ||||| || || ||| ||||||||| |||||| ||||||| || |||||| |||||||| || |
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| T |
33990237 |
ctgggatgatccaaatgttcattgtattgctttatgtcttgaaccacaagagttaaatccttcaagattgacctcaacaattgccttgcactttggtgct |
33990138 |
T |
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| Q |
101 |
tttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgta---gcgctactcatgaa |
197 |
Q |
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|| ||||| ||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
33990137 |
ttcgtgctgtttcaactatttgagatattttgttcaagacatcatg------aaatcttgttgtaagggtaataatatgtgtagtggcgctactcatgaa |
33990044 |
T |
|
| Q |
198 |
tttgagattccttcttctgtttttgcctgtc |
228 |
Q |
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|||||||||||||| |||| ||||||||||| |
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| T |
33990043 |
tttgagattccttcctctgcttttgcctgtc |
33990013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 33973425 - 33973227
Alignment:
| Q |
1 |
ctggggtgatccaaaagatcaatgtattgctttatttcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttct |
100 |
Q |
| |
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||||| |||||||| | ||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |
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| T |
33973425 |
ctgggttgatccaagtgttcattgtaatgctttatatcttgtacaacgggagataaatcctttaagattaacctaaacaatagccttgaactttggttct |
33973326 |
T |
|
| Q |
101 |
tttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgt---gtagcgctactcatgaa |
197 |
Q |
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|| ||||| ||| || |||| |||||||||||||||||||||| | |||||||||||||||||||||||| ||| || |||||||||||||| |
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| T |
33973325 |
ttcgtgctgtttcaactatttcagatattttgttcaagacatca------ttaaatcttgttgtaagggtaataatatgtgtcgtggcgctactcatgaa |
33973232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33959408 - 33959346
Alignment:
| Q |
1 |
ctggggtgatccaaaagatcaatgtattgctttatttcttgtacaacgggagataaatccttt |
63 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||| ||||| || || ||||||||||||||| |
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| T |
33959408 |
ctggggtgatccaaatgatcattgtattgctttatgtcttgaaccacaggagataaatccttt |
33959346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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