View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4869_high_2 (Length: 541)
Name: NF4869_high_2
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Complemental strand, 22339401 - 22338897
Alignment:
| Q |
19 |
aactaacttacccaacaagaaactacacgaccttaaacccggcactctaccaatcctcgacatttcatcaaacacatagagtgcatgtttcgtcatccct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22339401 |
aactaacttacccaacaagaaactacacgaccttaaacccggcactctaccaatcctcgacatttcatcaaacacatagagtgcatgtttcgtcatccct |
22339302 |
T |
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| Q |
119 |
ctttccacaaaagccttcatcaacatatcaaaaacaccagaacaaaatccaaactccttataaaccgcgaaaacatgattacacaccgcgtatgcacggt |
218 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22339301 |
ctttccgcaaaagccttcatcaacatatcaaaaacaccagaacaaaatccaaactccttataaaccgagaaaacatgattacacaccgcgtatgcacggt |
22339202 |
T |
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| Q |
219 |
aattattcgtgcaatgaaggtccataacctggcagagaacagtggttgcttcggggaaaagacgagcatgtgtgagaatgtgaagcaggatggagtagga |
318 |
Q |
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||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22339201 |
aattattcgtgcaatgaaggtccataagctggcggagaacggtggttgcttcggggaaaagacgagcatgtgtgagaatgtgaagcaggatggagtagga |
22339102 |
T |
|
| Q |
319 |
aagggaatgtgggcggtaatgagagttttgtgtggcgagatggaagaaggagaggcaggcggaggggtggagacggaggcgacggaggagggaatcagtg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22339101 |
aagggaatgtgggcggtaatgagagttttgtgtggcgagatggaagaaggagaggcaggcggaggggtggagacggaggcgacggaggagggaatcagtg |
22339002 |
T |
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| Q |
419 |
aggtggtcggagtatttgaaggtgagattgtggagggattgaggacggttgaggatgaggaggcgggtgattcggtcgaggagttcgggttgagggaggt |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22339001 |
aggtggtcggagtatttgaaggtgagattgtggagggattgaggacggttgaggatgaggaggcgggtgattcggtcgaggagttcggggtgagggaggt |
22338902 |
T |
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| Q |
519 |
ttgtt |
523 |
Q |
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||||| |
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| T |
22338901 |
ttgtt |
22338897 |
T |
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