View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4869_high_3 (Length: 453)
Name: NF4869_high_3
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 12 - 434
Target Start/End: Complemental strand, 27261760 - 27261338
Alignment:
| Q |
12 |
atcatcatcacttagaagttacaacttgtccaacattgaatagaatcataatagcttcatccatttttaatgtccctttccatgccacatcagttttaag |
111 |
Q |
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| T |
27261760 |
atcatcatcacttagaagttacaacttgtccaacattgaatagaatcataatagcttcatccatttttaatgtccctttccatgccacatcagttttaag |
27261661 |
T |
|
| Q |
112 |
aatttcaacaattttttattccaactatgtaacatgtatctcaccttatctcactttcaacttgttttccttctcctactttcttaagtctactttttca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261660 |
aatttcaacaattttttattccaactatgtaacatgtatctcaccttatctcactttcaacttgttttccttctcctactttcttaagtctactttttca |
27261561 |
T |
|
| Q |
212 |
ctttaagtcactaaagttgttgaatgtgacaaccacatgaaattcaaccatctctagtggtaaagtcaaataagaacctgttcctaacttctagagctca |
311 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27261560 |
ttttaagtcactaaagttgttgaatgtgataaccacatgaaattcaaccatctctagtggtaaagccaaataagaacctgttcctaacttctagagctca |
27261461 |
T |
|
| Q |
312 |
acaagacactactgaaaatgctctaagtagataaacatggacaataataattgaagttcattaatattatacatggtttaaccaacatgctactttgaaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261460 |
acaagacactactgaaaatgctctaagtagataaacatggacaataataattgaagttcattaatattatacatggtttaaccaacatgctactttgaaa |
27261361 |
T |
|
| Q |
412 |
actagaataccactatgcaaaaa |
434 |
Q |
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||||||||||||||||||||||| |
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| T |
27261360 |
actagaataccactatgcaaaaa |
27261338 |
T |
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