View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4869_high_7 (Length: 340)
Name: NF4869_high_7
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 174 - 331
Target Start/End: Original strand, 51594981 - 51595138
Alignment:
| Q |
174 |
agccatgccctctcacttccgaattccttcatctaaacatacaaagaacctgtatgagaaaaagacaaaccaaaacacaaaacatctttcttttgtgcca |
273 |
Q |
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| T |
51594981 |
agccatgccctctcacttccgaattccttcatctaaacatgcaaagaacctgtatgagaaaaagacaaaccaaaacacaaaacatctttcttttgtgcca |
51595080 |
T |
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| Q |
274 |
annnnnnngttgttgatagtttcttggccaatattgaaactatgtttgctgtcctttg |
331 |
Q |
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| T |
51595081 |
atttttttgttgttgatagtttcttggccaatattgaaactatgtttgctgtcctttg |
51595138 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 26610220 - 26610176
Alignment:
| Q |
104 |
aaaggataacgacgttgacaatttaaaaataaataattaaatcgg |
148 |
Q |
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| T |
26610220 |
aaaggacaacgacgttgacaatttaaaaataaataattaaatcgg |
26610176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 26610322 - 26610290
Alignment:
| Q |
11 |
cagagacaatgaaaaagataaatatttttgtaa |
43 |
Q |
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| T |
26610322 |
cagagacaatgaaaaagataaatatttttgtaa |
26610290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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