View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4869_high_9 (Length: 310)

Name: NF4869_high_9
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4869_high_9
NF4869_high_9
[»] chr8 (11 HSPs)
chr8 (19-297)||(1964473-1964751)
chr8 (48-127)||(2005494-2005571)
chr8 (238-297)||(2011943-2012002)
chr8 (53-127)||(2015888-2015960)
chr8 (46-127)||(2008874-2008953)
chr8 (32-127)||(1968048-1968141)
chr8 (28-97)||(2012517-2012585)
chr8 (46-98)||(2013448-2013500)
chr8 (44-93)||(2019303-2019352)
chr8 (238-297)||(1968628-1968687)
chr8 (46-127)||(1962462-1962541)
[»] chr1 (2 HSPs)
chr1 (136-231)||(5900614-5900709)
chr1 (46-127)||(5901641-5901720)
[»] chr3 (1 HSPs)
chr3 (28-127)||(18189409-18189506)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 1964473 - 1964751
Alignment:
Q  19 taggtgactttcatgaacttggtctctaatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1964473 taggtgactttcatgaacttggtctctaatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattc 1964572  T
Q  119 ttcaattctaaatgctgggtttttcatgcaaattaagaactcgaaagaggggttttctgtcaatgctgaatattttggaaaagcgattatcagcaaaaca 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1964573 ttcaattctaaatgctgggtttttcaagcaaattaagaactcgaaagaggggttttctgtcaatgctgaatattttggaaaagcgattatcagcaaaaca 1964672  T
Q  219 agcaacggatccatttcgggatcaagtcaagattacaaacacttccttcaacatgttaaaagtttaagttttgctgatg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1964673 agcaacggatccatttcgggatcaagtcaagattacaaacacttccttcaacatgttaaaagtttaagttttgctgatg 1964751  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 2005571 - 2005494
Alignment:
Q  48 tttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 127  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||  ||||| |||||| |||||||||||||||||||    
T  2005571 tttccatggagaaaacaattcatattgcagttgttccaggtgttgg--atatagccatttggtctctattcttcaattct 2005494  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 2012002 - 2011943
Alignment:
Q  238 gatcaagtcaagattacaaacacttccttcaacatgttaaaagtttaagttttgctgatg 297  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  2012002 gatcaagtcaagcttacaaatacttccttcaacatgttaaaagtttaagttttgctgatg 2011943  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 2015960 - 2015888
Alignment:
Q  53 atggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 127  Q
    ||||||||||| ||||| |||||||||||||||||||||||  ||||| |||||| |||||||||||||||||||    
T  2015960 atggagaaaacaattcatattgcagttgttccaggtgttgg--atatagccatttggtctctattcttcaattct 2015888  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 2008953 - 2008874
Alignment:
Q  46 aatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 127  Q
    ||||||||||||||||||  |||| |||||||||||||||||||||||  ||||| |||||| ||| |||||||||||||||    
T  2008953 aatttccatggagaaaacagttcatattgcagttgttccaggtgttgg--atatagccatttggtccctattcttcaattct 2008874  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 1968048 - 1968141
Alignment:
Q  32 tgaacttggtctctaatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 127  Q
    ||||||||  ||| ||||||||||||||||||  |||| |||||||||||||||||||||||  |||||  ||||| ||| |||||||||||||||    
T  1968048 tgaacttgacctcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttgg--atatagtcatttggtccctattcttcaattct 1968141  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 2012585 - 2012517
Alignment:
Q  28 ttcatgaacttggtctctaatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtat 97  Q
    ||||||||||||| ||| |||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||    
T  2012585 ttcatgaacttggcctcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtcgggtat 2012517  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 2013500 - 2013448
Alignment:
Q  46 aatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtata 98  Q
    |||||||||||||||||  ||||| ||||||||||||||||||||||| ||||    
T  2013500 aatttccatggagaaaaaaattcatattgcagttgttccaggtgttggatata 2013448  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 2019352 - 2019303
Alignment:
Q  44 ctaatttccatggagaaaaccattcacattgcagttgttccaggtgttgg 93  Q
    ||||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  2019352 ctaattttcatggagaaaacagttcatattgcagttgttccaggtgttgg 2019303  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 297
Target Start/End: Original strand, 1968628 - 1968687
Alignment:
Q  238 gatcaagtcaagattacaaacacttccttcaacatgttaaaagtttaagttttgctgatg 297  Q
    |||||||||||| ||||||||||||||| | || | |||||  |||||||||||||||||    
T  1968628 gatcaagtcaagtttacaaacacttcctcccactttttaaacttttaagttttgctgatg 1968687  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 1962462 - 1962541
Alignment:
Q  46 aatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 127  Q
    ||||| ||||||||||||  |||| |||||||||||||| ||||||||  ||||| ||| ||| || | |||||||||||||    
T  1962462 aattttcatggagaaaacagttcatattgcagttgttcctggtgttgg--atatagccacttattcccaattcttcaattct 1962541  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 5900614 - 5900709
Alignment:
Q  136 ggtttttcatgcaaattaagaactcgaaagaggggttttctgtcaatgctgaatattttggaaaagcgattatcagcaaaacaagcaacggatcca 231  Q
    ||||||||  |||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  5900614 ggtttttccagcaagttaagaactccaaagatgggttttctgtcattgctgaatattttggaaaagggattatcagcaaaacaagcaatggatcca 5900709  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 5901641 - 5901720
Alignment:
Q  46 aatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 127  Q
    ||||| |||||||||||| ||||||||||| ||| ||||||||| | ||  |||| ||||||||||||||||||| ||||||    
T  5901641 aattttcatggagaaaacaattcacattgctgttattccaggtgcttgg--tatagccatttagtctctattcttgaattct 5901720  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 18189409 - 18189506
Alignment:
Q  28 ttcatgaacttggtctctaatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 127  Q
    ||||||||||| |  || |||||||||||| ||||| |||||||||||||||||||||||||||||||||  |  || |||||| |||||||||||||||    
T  18189409 ttcatgaacttagcatcaaatttccatggataaaacaattcacattgcagttgttccaggtgttgggtatgga--cacttagtccctattcttcaattct 18189506  T

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