View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4869_low_4 (Length: 406)
Name: NF4869_low_4
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 41 - 395
Target Start/End: Original strand, 1877191 - 1877548
Alignment:
| Q |
41 |
atagcttatcttccacttagttagattactctagacttctgttcatccacttcaataggataaaaatattnnnnnnnnt----------ccttgaaaatc |
130 |
Q |
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| T |
1877191 |
atagcttatcttccacttaattagattactctagacttctgttcatccacttcaataggataaaaaaaataaaaaaaataaaaaaaaatccttgaaaatc |
1877290 |
T |
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| Q |
131 |
ttcaacacatgaaaaaagaagcatttagaaatatatggaccaaccacttataggactataggagacgtatcaaatggttttttcttctaatcattcttca |
230 |
Q |
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| T |
1877291 |
ttcaacacatgaaaaaagaagcatttagaaatatatggaccaaccacttataggactataggagacgtatcaaatggttttttcttctaatcattcttca |
1877390 |
T |
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| Q |
231 |
tgctagattcatgcccattgcccaagcattataggtttttaattcaaaagctttccctctatgtgttacacaaagggcaagaaggtgaaagtgattaaaa |
330 |
Q |
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| T |
1877391 |
tgctagattcatgcc-------caagcattataggtttttaattcaaaagctttccctctatgtgttacacaaagggcaagaagttgaaagggattaaaa |
1877483 |
T |
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| Q |
331 |
tatttcaaacactgttgagtctataagttgactgctatgttcccacaaggcattactattaccta |
395 |
Q |
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| T |
1877484 |
tatttcaaacactgttgagtctataagttgactgctatgttcccacaaggcattactattaccta |
1877548 |
T |
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