View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4869_low_5 (Length: 372)
Name: NF4869_low_5
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 116 - 362
Target Start/End: Complemental strand, 4570346 - 4570101
Alignment:
| Q |
116 |
atcatattggaataagaccaactac------gagattggacatctcagattcacccaaaaccttaagatattgaatgtcaacttattcgtacttaaaggt |
209 |
Q |
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| T |
4570346 |
atcatattggaataagaccaattacactagtgagattggacatctcagattcacccaaaaccttaagatattgaacgtcaacttattcgtacttaaaggt |
4570247 |
T |
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| Q |
210 |
tggatcatcatattgatacttgaaggtcagctatatcgaattcaccatcgtaccgtggaataagagagacatca------nnnnnnnnnngaataaagag |
303 |
Q |
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| T |
4570246 |
tggatcatcatattgatacttgaa-------------gaattcaccattgtaccgtggaataagagagacatcattttttattttatttttaataaagag |
4570160 |
T |
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| Q |
304 |
agacatcatttgaaatccatttgttataccaaaccggaatagatgcaccatcacctatg |
362 |
Q |
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| T |
4570159 |
agacatcatttaaaatccatttgttataccaaactggaatagatgcatcatcacctatg |
4570101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 4570387 - 4570350
Alignment:
| Q |
19 |
ggtaaaaatgtcatttttgaatgtataagagcaaatgg |
56 |
Q |
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| T |
4570387 |
ggtaaaaatgtcatttttgaatgtataagagcaaatgg |
4570350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 8782500 - 8782467
Alignment:
| Q |
306 |
acatcatttgaaatccatttgttataccaaaccg |
339 |
Q |
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| T |
8782500 |
acatcatttgcaatccatttgttataccaaaccg |
8782467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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