View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4869_low_6 (Length: 363)
Name: NF4869_low_6
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 45284925 - 45284594
Alignment:
| Q |
19 |
atggacttcatgcaatccctctttcaaacttttcctccttcttcccctccttctccaccagtggaactgtgcaatgacattctctttgaaatctttctac |
118 |
Q |
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| T |
45284925 |
atggacttcatgcaatccctctttcaaacttttcctccttcttcccctccttctccaccagtggaactgtgcaatgacattctctttgaaatctttctac |
45284826 |
T |
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| Q |
119 |
gcctccctcccgaagtgctccctcgtctcagtatccttaacaaacaatctaatgaaatgattaaaagccccctgtttcaaacaacctattgggcacaaaa |
218 |
Q |
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| T |
45284825 |
gcctccctcccgaagtgctccctcgtctcagcatccttaacaaacaatctaatgaaatgattaaaagcccc--gtttcaaacaacctattgggcacaaaa |
45284728 |
T |
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| Q |
219 |
actaagactccctcgcctttgtgctatggtgtattaccaacgtaagttgacaaaccgaataggttttaccttgatcaacaaggaacatgatcatagattg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45284727 |
actaagactccctcgcctttgtgctatggtgtattaccaacgtaagttgacaaaccgaataggttttaccttgatcaacaaggaacatgatcatagattg |
45284628 |
T |
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| Q |
319 |
gacaagaatgagttccataagtatacacaggttc |
352 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
45284627 |
gacaagaatgagttccataagtatacacaggttc |
45284594 |
T |
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