View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4869_low_9 (Length: 317)
Name: NF4869_low_9
Description: NF4869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4869_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 40949653 - 40949347
Alignment:
| Q |
1 |
atcaccactatttaaatagtgagtagtagttatgagccatccttttttaaatcagttaattgattaaccggtctaaaaagtcctgcatcatgtttgtaat |
100 |
Q |
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| T |
40949653 |
atcaccactatttaaatagtgagtggtagttatgagcattcgtttttaaaatcagttaactgattaaccggtctaaaaagtcctgcatcatgtttgtaat |
40949554 |
T |
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| Q |
101 |
aattagtctccacatctatacaaacaagaggtacaacttttaagatcgcttaatcatttaaccgggttaaagagtgaattgtttgttacc-nnnnnnnnn |
199 |
Q |
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| T |
40949553 |
aatgagtctccacatctatacaaacaagaggtacaacttttaagatcgcttaatcatttaaccgggttaaagagtgaattgtttgttaccaaaaaaaaaa |
40949454 |
T |
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| Q |
200 |
gagtgaattgttcttaacaaccatttaatagtgatgcttgtcctttatggggtgaattgtttctcgggatgccaaccttgttggggtgtcgatgtgtcct |
299 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
40949453 |
gagtgaattgttcttaacaatcattcaatagtgatgcttgtccttgttggggtgaattgtttctcggggtgccaaccttgttggggtgtcgatgtgttct |
40949354 |
T |
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| Q |
300 |
cttgatg |
306 |
Q |
| |
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||||||| |
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| T |
40949353 |
cttgatg |
40949347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 34517702 - 34517750
Alignment:
| Q |
258 |
gtttctcgggatgccaaccttgttggggtgtcgatgtgtcctcttgatg |
306 |
Q |
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| T |
34517702 |
gtttctcgggatgccaaccttattgggatgtcgatgtttcttcttgatg |
34517750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 18517704 - 18517749
Alignment:
| Q |
261 |
tctcgggatgccaaccttgttggggtgtcgatgtgtcctcttgatg |
306 |
Q |
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| T |
18517704 |
tctcgggatgccaacctagttgggatgtcgatgttgcctcttgatg |
18517749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 2259452 - 2259404
Alignment:
| Q |
258 |
gtttctcgggatgccaaccttgttggggtgtcgatgtgtcctcttgatg |
306 |
Q |
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||||| |||||||||||||| |||||| ||||| ||| ||||||||||| |
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| T |
2259452 |
gtttcccgggatgccaacctagttgggatgtcggtgtttcctcttgatg |
2259404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 5781135 - 5781099
Alignment:
| Q |
258 |
gtttctcgggatgccaaccttgttggggtgtcgatgt |
294 |
Q |
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|||||||||||||||||||| |||||| ||||||||| |
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| T |
5781135 |
gtttctcgggatgccaacctagttgggatgtcgatgt |
5781099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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