View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4870-Insertion-14 (Length: 361)
Name: NF4870-Insertion-14
Description: NF4870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4870-Insertion-14 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: scaffold0082 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 16216 - 16570
Alignment:
| Q |
8 |
tttatttcctgca-tgtccaggccatttcctttcgatggcagatcccgtggaagttaactttgttttgctgtcggaccaggagagtgaatcgaataggtt |
106 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16216 |
tttatttcctgcaatgtccaggccatttcctttcgatggcagatcccgtggaagttaactttgttttgctgtcggaccaggagagtgaatcgaataggtt |
16315 |
T |
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| Q |
107 |
acataggcaggacaggcgagttctcatacatttcctggcgctgttagcctgccctaatctacttccttctcctttctcctttttagaagtgactgtttac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16316 |
acataggcaggacaggcgagttctcatacatttcctggcgctgttagcctgccctaatctacttccttctcctttctcctttttagaagtgactgtttac |
16415 |
T |
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| Q |
207 |
tcatcttttccgaagtgagcatatactgaatctcccctagtgtaagaaagtttatttctatttctaaaacttgcctcttgtaagtgggtgtataaaatgg |
306 |
Q |
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| T |
16416 |
tcatcttttccgaagtgagcatatactgaatctcccctagtgtaagaaagtttatttctatttctaaaacttgcctcttgtaagtgggtgtataaaatgg |
16515 |
T |
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| Q |
307 |
catatctaagttagtttgaaagccgggttatttaaatcccaatgccctcttttga |
361 |
Q |
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| T |
16516 |
catatctaagttagtttgaaagccgggttatttaaatcccaatgccctcttttga |
16570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 21946854 - 21947073
Alignment:
| Q |
8 |
tttatttcctgca-tgtccaggccatttcctttcgatggcagatcccgtggaagttaactttgttttgctgtcggaccaggagagtgaatcgaataggtt |
106 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21946854 |
tttatttcctgcaatgtccaggccatttcctttcgatggcaaatcccgtggaagttaactttgttttgctgtcggaccaggagagtgaatcgaataggtt |
21946953 |
T |
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| Q |
107 |
acataggcaggacaggcgagttctcatacatttcctggcgctgttagcctgccctaatctacttccttctcctttctcctttttagaagtgactgtttac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21946954 |
acataggcaggacaggcgagttctcatacatttcctggcgctgttagcctgccctaatctacttccttctcctttctcctttttagaagtgactgtttac |
21947053 |
T |
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| Q |
207 |
tcatcttttccgaagtgagc |
226 |
Q |
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| T |
21947054 |
tcatcttttccgaagtgagc |
21947073 |
T |
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