View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4870-Insertion-2 (Length: 1089)

Name: NF4870-Insertion-2
Description: NF4870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4870-Insertion-2
NF4870-Insertion-2
[»] chr4 (9 HSPs)
chr4 (8-965)||(26589743-26590677)
chr4 (279-388)||(13126510-13126619)
chr4 (274-363)||(21731616-21731704)
chr4 (274-363)||(50681049-50681137)
chr4 (274-363)||(54426065-54426153)
chr4 (276-355)||(55064859-55064937)
chr4 (330-363)||(21523634-21523667)
chr4 (274-363)||(39603130-39603218)
chr4 (275-363)||(40830989-40831076)
[»] chr7 (10 HSPs)
chr7 (787-965)||(291989-292169)
chr7 (274-364)||(420382-420471)
chr7 (274-388)||(34744050-34744164)
chr7 (276-350)||(11619131-11619204)
chr7 (274-363)||(19022545-19022633)
chr7 (274-363)||(21568455-21568543)
chr7 (280-363)||(3927970-3928052)
chr7 (280-363)||(19302523-19302605)
chr7 (275-326)||(30570927-30570978)
chr7 (271-363)||(21196288-21196378)
[»] chr2 (9 HSPs)
chr2 (683-823)||(36418074-36418214)
chr2 (279-363)||(15757618-15757701)
chr2 (274-363)||(43279487-43279577)
chr2 (274-363)||(26202050-26202138)
chr2 (69-114)||(3070262-3070307)
chr2 (302-363)||(5745745-5745805)
chr2 (274-327)||(12194974-12195027)
chr2 (274-327)||(12289819-12289872)
chr2 (69-114)||(38078426-38078471)
[»] chr6 (3 HSPs)
chr6 (683-759)||(5303957-5304033)
chr6 (781-823)||(5303920-5303962)
chr6 (330-363)||(26559200-26559233)
[»] chr3 (5 HSPs)
chr3 (683-759)||(54729566-54729642)
chr3 (274-388)||(30443915-30444029)
chr3 (274-387)||(39980751-39980864)
chr3 (274-363)||(13715532-13715620)
chr3 (282-363)||(51929317-51929397)
[»] chr5 (6 HSPs)
chr5 (274-388)||(16937817-16937931)
chr5 (279-366)||(3735115-3735201)
chr5 (274-363)||(12857665-12857753)
chr5 (330-363)||(32859680-32859713)
chr5 (330-363)||(32861852-32861885)
chr5 (330-363)||(32862636-32862669)
[»] chr8 (7 HSPs)
chr8 (274-363)||(26771287-26771375)
chr8 (282-363)||(10758217-10758297)
chr8 (274-363)||(35643948-35644036)
chr8 (274-388)||(35534547-35534661)
chr8 (69-119)||(9836870-9836920)
chr8 (274-363)||(18133678-18133766)
chr8 (276-345)||(25930531-25930600)
[»] chr1 (7 HSPs)
chr1 (274-363)||(49938769-49938857)
chr1 (274-361)||(51929501-51929587)
chr1 (330-363)||(7941683-7941716)
chr1 (276-363)||(24915011-24915097)
chr1 (280-363)||(29904779-29904861)
chr1 (330-363)||(7119898-7119931)
chr1 (274-323)||(37631558-37631607)


Alignment Details
Target: chr4 (Bit Score: 626; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 8 - 965
Target Start/End: Complemental strand, 26590677 - 26589743
Alignment:
Q  8 tctgtttggattgaattatttgagt--atctacttacataagcttataacatttttcgcatgctgtttttaactcatttatagaagctctccaagatagc 105  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| | ||||||||||||||||||  ||||| |||||||||||||    
T  26590677 tctgtttggattgaattatttgagtttatctacttacataagcttataacatttttcgtaagctgtttttaactcattttcagaagttctccaagatagc 26590578  T
Q  106 ttatgaaaataggtcatgcaaaaacaattaaattaaatttttggcttttttggatcaacagcttatgtcacatgcacttattataataatcacttatgta 205  Q
    ||||  |||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| || |||||||||||| |   ||||||||||||||||    
T  26590577 ttatttaaataggtcatgcaaaaacagttaaattagatttttggcctttttggatcaacagctcatatcacatgcacttgt---aataatcacttatgta 26590481  T
Q  206 taagcagctatttttatagcaaatggtaaattaannnnnnnnnnngtgtgtatgctataagttgtctttattggagaacttatgatagtaagatgaaaaa 305  Q
    ||||||||||||||||||||||||||||| ||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26590480 taagcagctatttttatagcaaatggtaattt------tttttttgtgtgtatgctataagttgtctttattggagaacttatgatagtaagatgaaaaa 26590387  T
Q  306 agcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaagttatgatagtgggtaagctcaaatgaataaacccaaacatc 405  Q
    |||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26590386 agctcttgaaagttgtcataaat-tgttttcataaattcttccaagcagtctcacaaagttatgatagtgggtaagctcaaatgaataaacccaaacatc 26590288  T
Q  406 ctttatcttttgttttagaagtagattatacaaaatcatgataattaataagtgcgtatgctataagct-tttgatccaaacagggcctttatacatttt 504  Q
    ||||||            ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| |    
T  26590287 ctttat------------aagtagattatacaaaatcatgataattaataagtgcttatgctataagctgttttatccaaacagggcctttatacattct 26590200  T
Q  505 ggtaaaggttagtttttgcaaaatgattgctttttaattttaaacaatctctttggaaaccgatggaaaattcnnnnnnnnnnctaatgctaatttaaaa 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||          |||||||||||||||||    
T  26590199 ggtaaaggttagtttttgcaaaatgattgctttttaattttaaacaatctctttggaaaccgaaggaaaattctttgtttt--ctaatgctaatttaaaa 26590102  T
Q  605 attaaagatgcaannnnnnnngatttaaacaatgtgatttggtagactgatattaagggtcattttttgtgttttaacagaaatggagcaagggaaagca 704  Q
    |||||||||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26590101 attaaagatgcaaatttttttgatttaaacaatgtgatttggtagagtgatattaagggtcattttttgtgttttaacagaagtggagcaagggaaagca 26590002  T
Q  705 aaaggagaaggtgaacaacatggtgctgtttgatcagggtacctatgacaagctcctaactgaagcacccaaatacaagctcatcactccttctgtcctc 804  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26590001 aaaggagaaggtgaacaacatggtgctgtttgatcagggtacctatgacaagctcctaactgaagcacccaaatacaagctcatcactccttctgtcctc 26589902  T
Q  805 tctgatcgtttgagggtaattcttttactaatgccttttcttatgttgtggatagatttttgataaagatgaataattgtattcgtgtattattatgttg 904  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||    
T  26589901 tctgatcgtttgagggtaattcttttactactgccttttcttatgttgtggatagatttgtgataatgatgaataattgtatgcgtgtattattatgttg 26589802  T
Q  905 cagtgcatgttatgtcttatgttaagagttttactgcatca-tgtaaatcttttaaacctag 965  Q
    ||  |||  || ||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  26589801 caaagca--ttctgtcttatg-taagagttttactgcatcattggaaatcttttaaacctag 26589743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 279 - 388
Target Start/End: Complemental strand, 13126619 - 13126510
Alignment:
Q  279 gagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcac-aaagttatgatagtggg 377  Q
    |||||||||||| | |||| |||||||||||| ||| |  ||||||||   |||||| |||| ||||||||||||||||||| ||| ||||| |||| ||    
T  13126619 gagaacttatgaaaataagctgaaaaaagcttatgataaatgtcataagc-tgtttttataagttcttccaaacagtctcacaaaacttatgttagtagg 13126521  T
Q  378 taagctcaaat 388  Q
    |||||| ||||    
T  13126520 taagctaaaat 13126510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 21731704 - 21731616
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    |||||||||| |||||| |||||| ||||||||| || ||||| |||| ||||   ||||||||||| |||| ||||||| |||||||||    
T  21731704 tattggagaatttatgaaagtaagttgaaaaaagtttatgaaaattgtgataagc-tgttttcataagttctcccaaacaatctcacaaa 21731616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 50681137 - 50681049
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    |||||||||| |||||| | |||  |||||||||||| ||||| |||||||  || ||||||||||| ||||  ||||||||||||||||    
T  50681137 tattggagaaattatgaaaataaattgaaaaaagcttatgaaaattgtcat-taactgttttcataagttctctcaaacagtctcacaaa 50681049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 54426065 - 54426153
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||||||||| | |||  |||||||||||| ||||| ||||||| ||  ||||||| ||| |||| |||| ||||||||||||    
T  54426065 tattggagaacttatgaaaataacttgaaaaaagcttatgaaaattgtcat-aagctgttttcctaagttctcccaagcagtctcacaaa 54426153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 55064859 - 55064937
Alignment:
Q  276 ttggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagt 355  Q
    ||||||||||||||| | |||||||||||||||| ||||||  |||||| ||  |||||||| || |||| |||||||||    
T  55064859 ttggagaacttatgaaaataagatgaaaaaagctattgaaaaatgtcat-aagttgttttcaaaagttctcccaaacagt 55064937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 363
Target Start/End: Original strand, 21523634 - 21523667
Alignment:
Q  330 tgttttcataaattcttccaaacagtctcacaaa 363  Q
    |||||||||||||||||||||||||| |||||||    
T  21523634 tgttttcataaattcttccaaacagtgtcacaaa 21523667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 39603218 - 39603130
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||||||||| | |||  | |||||||||| | ||| |||||||||   ||||||| ||| |||| |||||||||||||||||    
T  39603218 tattggagaacttatgaaaataacttaaaaaaagcttataaaaattgtcataagc-tgttttcctaagttctcccaaacagtctcacaaa 39603130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 363
Target Start/End: Complemental strand, 40831076 - 40830989
Alignment:
Q  275 attggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttt-tcataaattcttccaaacagtctcacaaa 363  Q
    |||||||||||||||| | |||| |||||||||||| | ||||||||| |||   ||||| |||||| ||||||| ||||||||||||||    
T  40831076 attggagaacttatgaaa-taagttgaaaaaagcttataaaagttgtcgtaagc-tgtttctcataatttcttccgaacagtctcacaaa 40830989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 3e-54; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 787 - 965
Target Start/End: Complemental strand, 292169 - 291989
Alignment:
Q  787 atcactccttctgtcctctctgatcgtttgagggtaattcttttactaatgccttttcttatgttgtgg-atagatttttgataaagatgaataattgta 885  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||   ||| | ||||||    
T  292169 atcactccttctgtcctctctgatcgtttgagggtaattcttttactaatgccttttcttatgttgtggtatagattagtgataatcgtgattgattgta 292070  T
Q  886 ttcgtgtattattatgttgcagtgcatgttatgtcttatgttaagagttttactgcatca-tgtaaatcttttaaacctag 965  Q
    | |||||||||||||||||   ||||||| ||||| |||||||| ||||||||||||||| ||||||||||||||||||||    
T  292069 tgcgtgtattattatgttgtgatgcatgtaatgtcctatgttaatagttttactgcatcattgtaaatcttttaaacctag 291989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 274 - 364
Target Start/End: Original strand, 420382 - 420471
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaag 364  Q
    ||||||||||||||||| | |||| ||||||| ||||| ||||  |||||||||  ||||||||||| |||| ||||||||||||||||||    
T  420382 tattggagaacttatgaaaataagttgaaaaaggctttagaaaactgtcataaat-tgttttcataagttctcccaaacagtctcacaaag 420471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 388
Target Start/End: Original strand, 34744050 - 34744164
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa-gttatgata 372  Q
    ||||||||||||||| | | ||||  ||||||||||| ||||| ||||||| ||  | ||||||| | ||||||||||||||||||||||  ||||| ||    
T  34744050 tattggagaacttataaaaataaggcgaaaaaagcttgtgaaaattgtcat-aagttcttttcattagttcttccaaacagtctcacaaatcttatgtta 34744148  T
Q  373 gtgggtaagctcaaat 388  Q
    || | |||||||||||    
T  34744149 gtagataagctcaaat 34744164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 276 - 350
Target Start/End: Complemental strand, 11619204 - 11619131
Alignment:
Q  276 ttggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaa 350  Q
    ||||||||||||||| | |||| |||||||||||| ||||| ||||||| ||  |||||||||||||||| ||||    
T  11619204 ttggagaacttatgaaattaagttgaaaaaagcttatgaaaattgtcat-aagttgttttcataaattctcccaa 11619131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 19022633 - 19022545
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||||||||| | |||| |||| | | ||| ||||| |||||||||   |||||||||||||||| ||||||| |||||||||    
T  19022633 tattggagaacttatgaaaataagttgaagacaacttatgaaaattgtcataagt-tgttttcataaattctcccaaacaatctcacaaa 19022545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 21568543 - 21568455
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||||||||  | |||| |||||| ||||| ||||| |||| ||||   ||||||||||| |||| |||||||||||||||||    
T  21568543 tattggagaacttatggaactaagttgaaaagagcttatgaaaattgttataagc-tgttttcataagttctcccaaacagtctcacaaa 21568455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 363
Target Start/End: Complemental strand, 3928052 - 3927970
Alignment:
Q  280 agaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||| | |||| |||||||||||| ||||| ||||||| ||| |||||| | |||||||  |||| |||||||||||    
T  3928052 agaacttatgaaaataagttgaaaaaagcttatgaaaattgtcat-aaattgttttaaaaaattctctcaaatagtctcacaaa 3927970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 363
Target Start/End: Complemental strand, 19302605 - 19302523
Alignment:
Q  280 agaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||| | |||| ||||||||| || ||||| ||||||| ||  |||||||||||||||| ||||| | |||||||||    
T  19302605 agaacttatgaaaataagttgaaaaaagtttatgaaaattgtcat-aagctgttttcataaattctcccaaatattctcacaaa 19302523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 30570978 - 30570927
Alignment:
Q  275 attggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataa 326  Q
    |||||||||||||||| | ||| ||||||||||||| ||||| |||||||||    
T  30570978 attggagaacttatgaaattaacatgaaaaaagcttatgaaaattgtcataa 30570927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 363
Target Start/End: Original strand, 21196288 - 21196378
Alignment:
Q  271 ctttattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    |||||||| |||||||| || | |||| | |||||||| | ||||| ||||||||    ||||| |||||||||||| |||||||||||||||    
T  21196288 ctttattgcagaacttaagaaaataagttaaaaaaagcatatgaaaattgtcatagc--tgtttgcataaattcttctaaacagtctcacaaa 21196378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 9e-33; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 683 - 823
Target Start/End: Original strand, 36418074 - 36418214
Alignment:
Q  683 agaaatggagcaagggaaagcaaaaggagaaggtgaacaacatggtgctgtttgatcagggtacctatgacaagctcctaactgaagcacccaaatacaa 782  Q
    ||||||||||||| || || |||||||| ||||| |||||||||||  |||||||||| ||||||||||| ||||| || |||||||| |||||||||||    
T  36418074 agaaatggagcaaaggtaaacaaaaggaaaaggttaacaacatggtcttgtttgatcaaggtacctatgataagcttctcactgaagctcccaaatacaa 36418173  T
Q  783 gctcatcactccttctgtcctctctgatcgtttgagggtaa 823  Q
     |||||||||||||| |||||||| |||||| | |||||||    
T  36418174 actcatcactccttcagtcctctccgatcgtctcagggtaa 36418214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 15757701 - 15757618
Alignment:
Q  279 gagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    |||||| ||||| | |||| |||||||||||| ||||| |||||||||  | ||||||||||||||| |||| ||||||||||||    
T  15757701 gagaacgtatgaaaataagctgaaaaaagcttctgaaaattgtcataagca-gttttcataaattctcccaagcagtctcacaaa 15757618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 43279577 - 43279487
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaat--tcttccaaacagtctcacaaa 363  Q
    ||||||||||||| ||| | |||| |||||||||||| ||||| ||||||| ||  |||||||||||||  ||| |||||||||||||||||    
T  43279577 tattggagaacttgtgaaaataagttgaaaaaagcttatgaaaattgtcat-aagctgttttcataaattctctcccaaacagtctcacaaa 43279487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 26202050 - 26202138
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||||||||| | |||| |||||||||||| ||||| ||||||| ||  |||| |||||||||||  |||| | |||||||||    
T  26202050 tattggagaacttatgaaaataagttgaaaaaagcttatgaaaattgtcat-aagttgttctcataaattctagcaaagaatctcacaaa 26202138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 3070262 - 3070307
Alignment:
Q  69 tgtttttaactcatttatagaagctctccaagatagcttatgaaaa 114  Q
    |||||||| || |||| ||||||||||||||||| |||||||||||    
T  3070262 tgtttttatcttatttctagaagctctccaagatggcttatgaaaa 3070307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 5745805 - 5745745
Alignment:
Q  302 aaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||| ||||| |||||||||   |||||||||||||||||| |||||||||| ||||    
T  5745805 aaaaagcttatgaaaattgtcataagc-tgttttcataaattcttctaaacagtctctcaaa 5745745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 12194974 - 12195027
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaa 327  Q
    ||||||||||||| ||| | |||| |||||||||||| ||||| ||||||||||    
T  12194974 tattggagaacttgtgaaaataagttgaaaaaagcttatgaaaattgtcataaa 12195027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 12289819 - 12289872
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaa 327  Q
    ||||||||||||||||| | |||| |||||||||||| ||||  ||||||||||    
T  12289819 tattggagaacttatgaaaataagttgaaaaaagcttatgaatattgtcataaa 12289872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 38078426 - 38078471
Alignment:
Q  69 tgtttttaactcatttatagaagctctccaagatagcttatgaaaa 114  Q
    |||||| | |||||||| | ||||||||||||||||||||||||||    
T  38078426 tgttttgagctcatttacataagctctccaagatagcttatgaaaa 38078471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 683 - 759
Target Start/End: Complemental strand, 5304033 - 5303957
Alignment:
Q  683 agaaatggagcaagggaaagcaaaaggagaaggtgaacaacatggtgctgtttgatcagggtacctatgacaagctc 759  Q
    |||||||||||||||| ||||||||||||||||| || || |||||| |||||||||||| ||| ||||| ||||||    
T  5304033 agaaatggagcaagggtaagcaaaaggagaaggtaaataatatggtgttgtttgatcaggctacttatgataagctc 5303957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 781 - 823
Target Start/End: Complemental strand, 5303962 - 5303920
Alignment:
Q  781 aagctcatcactccttctgtcctctctgatcgtttgagggtaa 823  Q
    |||||| | ||||||||||| ||||||||||||||||||||||    
T  5303962 aagctcgttactccttctgttctctctgatcgtttgagggtaa 5303920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 26559233 - 26559200
Alignment:
Q  330 tgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||| ||||||||||||||||||||||    
T  26559233 tgttttcataagttcttccaaacagtctcacaaa 26559200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 683 - 759
Target Start/End: Complemental strand, 54729642 - 54729566
Alignment:
Q  683 agaaatggagcaagggaaagcaaaaggagaaggtgaacaacatggtgctgtttgatcagggtacctatgacaagctc 759  Q
    |||||||||||||||| ||||||||||||||||| || || |||||| |||||||||||| ||| ||||| ||||||    
T  54729642 agaaatggagcaagggtaagcaaaaggagaaggtaaataatatggtgttgtttgatcaggctacttatgataagctc 54729566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 274 - 388
Target Start/End: Original strand, 30443915 - 30444029
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctca-caaagttatgata 372  Q
    ||||||||||||||||| | |||| |||||||||||| ||||| ||||||| ||  |||||||||||  ||| ||||||||||||| |||| |||||  |    
T  30443915 tattggagaacttatgaaaataagctgaaaaaagcttgtgaaaattgtcat-aagctgttttcataagctctaccaaacagtctcaccaaatttatgcca 30444013  T
Q  373 gtgggtaagctcaaat 388  Q
    || | |||||||||||    
T  30444014 gtagataagctcaaat 30444029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 39980751 - 39980864
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcac-aaagttatgata 372  Q
    ||||||||||||||||| | |||| |||||||||||| |||||   ||||| ||  ||||||||||| ||||   |||||||||||| ||| ||||| ||    
T  39980751 tattggagaacttatgaaaataagttgaaaaaagcttatgaaaccagtcat-aagctgttttcataagttctcttaaacagtctcacaaaacttatgcta 39980849  T
Q  373 gtgggtaagctcaaa 387  Q
    || | ||||||||||    
T  39980850 gtagataagctcaaa 39980864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 13715620 - 13715532
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||| ||||||||| | |||| ||||||| |||| |||||||||||||||   ||||||   || |||| |||||||||||||||||    
T  13715620 tattggacaacttatgaaaataagttgaaaaatgcttatgaaagttgtcataagc-tgttttaggaagttctaccaaacagtctcacaaa 13715532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 51929397 - 51929317
Alignment:
Q  282 aacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||||| ||||||||||||| | ||||| ||||||| ||  |||||||| |||||||  |||| ||| |||||||    
T  51929397 aacttatgatagtgagatgaaaaaagcctatgaaaattgtcat-aatctgttttcagaaattctctcaaatagtatcacaaa 51929317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 388
Target Start/End: Complemental strand, 16937931 - 16937817
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcac-aaagttatgata 372  Q
    |||||||||||||| || | |||| |||||||||||| ||||| ||||||| ||  ||||||||||| |||||||||||| |||||| ||| ||||| ||    
T  16937931 tattggagaacttaggaaaataagctgaaaaaagcttatgaaatttgtcat-aagctgttttcataagttcttccaaacactctcacaaaacttatgcta 16937833  T
Q  373 gtgggtaagctcaaat 388  Q
    || | |||||||||||    
T  16937832 gtagataagctcaaat 16937817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 366
Target Start/End: Complemental strand, 3735201 - 3735115
Alignment:
Q  279 gagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaagtt 366  Q
    ||||||||||||   |||| |||||||||||||||||| ||||||| ||  ||||||||| | |||| ||||||||| ||||||||||    
T  3735201 gagaacttatgaagataagctgaaaaaagcttttgaaaattgtcat-aagctgttttcatcagttctaccaaacagtatcacaaagtt 3735115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 12857753 - 12857665
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||||||||| | |||| ||||||||| || ||||| ||||||| ||  ||||||||||| |||| |  |||||| |||||||    
T  12857753 tattggagaacttatgaaaataagctgaaaaaaggttgtgaaaattgtcat-aagttgttttcataagttctccggaacagtttcacaaa 12857665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 32859713 - 32859680
Alignment:
Q  330 tgttttcataaattcttccaaacagtctcacaaa 363  Q
    |||||||||||||||||||||||||| |||||||    
T  32859713 tgttttcataaattcttccaaacagtgtcacaaa 32859680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 32861885 - 32861852
Alignment:
Q  330 tgttttcataaattcttccaaacagtctcacaaa 363  Q
    |||||||||||||||||||||||||| |||||||    
T  32861885 tgttttcataaattcttccaaacagtgtcacaaa 32861852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 32862669 - 32862636
Alignment:
Q  330 tgttttcataaattcttccaaacagtctcacaaa 363  Q
    |||||||||||||||||||||||||| |||||||    
T  32862669 tgttttcataaattcttccaaacagtgtcacaaa 32862636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 26771287 - 26771375
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    |||| |||||||||||| | |||| ||||||| |||||||||| ||||||| ||  ||||||||||| |||| |||||||||||||||||    
T  26771287 tattagagaacttatgaaaataagttgaaaaaggcttttgaaaattgtcat-aagctgttttcataagttctcccaaacagtctcacaaa 26771375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 10758297 - 10758217
Alignment:
Q  282 aacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||| |  ||| |||||||||||||||||| |||||||||   ||||||||||||||||  ||||||||||||||||    
T  10758297 aacttatgaaaacaagctgaaaaaagcttttgaaaattgtcataagc-tgttttcataaattctatcaaacagtctcacaaa 10758217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 35644036 - 35643948
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||| ||||||| | |||| |||||||||||| ||||| ||||||| ||| | ||||||||| || | |||||||||||||||||    
T  35644036 tattggagagcttatgaaaataagttgaaaaaagcttatgaaaattgtcat-aaactattttcataagttatcccaaacagtctcacaaa 35643948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 388
Target Start/End: Complemental strand, 35534661 - 35534547
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcac-aaagttatgata 372  Q
    ||||||||||||||||| ||||||  ||||||||||| | ||| ||||||| ||  |||||||| || ||||  ||||||||||||| ||| ||||| ||    
T  35534661 tattggagaacttatgaaagtaagccgaaaaaagcttgttaaaattgtcat-aagctgttttcacaagttctctcaaacagtctcacaaaacttatgtta 35534563  T
Q  373 gtgggtaagctcaaat 388  Q
    || | |||||||||||    
T  35534562 gtagataagctcaaat 35534547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 9836870 - 9836920
Alignment:
Q  69 tgtttttaactcatttatagaagctctccaagatagcttatgaaaataggt 119  Q
    |||| |||||||||||  | |||||||||||||||||||||||||| ||||    
T  9836870 tgttcttaactcatttccataagctctccaagatagcttatgaaaacaggt 9836920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 18133678 - 18133766
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||||||||| | |||| |||||||||||| ||||| |||| ||||   || ||||| ||  ||| |||||||||||||||||    
T  18133678 tattggagaacttatgaaaataagctgaaaaaagcttgtgaaaattgttataagc-tgatttcacaagctctcccaaacagtctcacaaa 18133766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 345
Target Start/End: Complemental strand, 25930600 - 25930531
Alignment:
Q  276 ttggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattct 345  Q
    ||||||||||| |||||||||| ||||||||||||  ||||  |||||| || || ||||||||| ||||    
T  25930600 ttggagaacttgtgatagtaagctgaaaaaagcttacgaaaagtgtcattaagattttttcataagttct 25930531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 49938769 - 49938857
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    |||| |||||||||||| | |||| |||||||||||||||||| ||||||| ||  ||||||||||| |||| ||||||| |||||||||    
T  49938769 tattagagaacttatgaaaataagttgaaaaaagcttttgaaaattgtcat-aagctgttttcataagttctcccaaacaatctcacaaa 49938857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 51929587 - 51929501
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcaca 361  Q
    ||||||||||||||||  | |||| |||||||||||| ||||| ||||||| ||  ||||||||| |||||| ||||||| |||||||    
T  51929587 tattggagaacttatggaaataagttgaaaaaagcttatgaaaattgtcat-aagctgttttcatgaattctcccaaacaatctcaca 51929501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 363
Target Start/End: Original strand, 7941683 - 7941716
Alignment:
Q  330 tgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||||||||||||||||||||||||||    
T  7941683 tgttttcataaattcttccaaacagtctcacaaa 7941716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 363
Target Start/End: Complemental strand, 24915097 - 24915011
Alignment:
Q  276 ttggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||| ||| | |||| |||||||||||| |||||  |||||| ||  |||||||||||||| | |||||||| ||||||||    
T  24915097 ttggagaacttgtgaaaataagttgaaaaaagcttatgaaaaatgtcat-aagttgttttcataaattgtcccaaacagcctcacaaa 24915011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 29904779 - 29904861
Alignment:
Q  280 agaacttatgatagtaagatgaaaaaagcttttgaaagttgtcataaaaatgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||| | |||| |||||||||||||||||| ||| ||| ||  |||||| |||| ||||  ||||||||||||||||    
T  29904779 agaacttatgaaaataaggtgaaaaaagcttttgaaaattgccat-aagctgtttttataagttctctcaaacagtctcacaaa 29904861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 7119931 - 7119898
Alignment:
Q  330 tgttttcataaattcttccaaacagtctcacaaa 363  Q
    ||||||||||||||||| ||||||||||||||||    
T  7119931 tgttttcataaattcttgcaaacagtctcacaaa 7119898  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 37631607 - 37631558
Alignment:
Q  274 tattggagaacttatgatagtaagatgaaaaaagcttttgaaagttgtca 323  Q
    ||||||||||||||||| | |||| |||||||||||| ||||| ||||||    
T  37631607 tattggagaacttatgaaaataagctgaaaaaagcttgtgaaaattgtca 37631558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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