View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4870-Insertion-3 (Length: 1060)
Name: NF4870-Insertion-3
Description: NF4870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4870-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 687; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 172 - 994
Target Start/End: Complemental strand, 10031758 - 10030934
Alignment:
| Q |
172 |
gcttattatcagtatcttctgcttagcatgacatagatttgataaatactaatagaattttctccctgatgaactgcagaaaaaggagactgcatagctg |
271 |
Q |
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| T |
10031758 |
gcttattatcagtatcttttgcttagcatggcatagatttgataaatactaatagaattttctccctgatgaactgcagaaaaaggagaccgcatagctg |
10031659 |
T |
|
| Q |
272 |
catttatttgagagcctatccaaggggaagctggggtatgttctgtcagaatgcttatttgattatcatggcaacattcaatatgttcctttgtatgatg |
371 |
Q |
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| T |
10031658 |
catttatttgagagcctatccaaggggaagctggggtatgttttgtcagaatgcttattttattagcatggcaacattcaatatgttcctttgtatgatg |
10031559 |
T |
|
| Q |
372 |
taccgcatagaactcatgtctaacgttttaaaaacttgtcacttgttttatctgtattccttgaccatgtgaaatgtactgtttttgaatttcagtgtta |
471 |
Q |
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| T |
10031558 |
taccgcatagaactcatgtctaacgttttaaaaacttgtcacttgttttatctgtattccttgaccatgtgaaatgtactgtttttgaatttcagtgtta |
10031459 |
T |
|
| Q |
472 |
ctttcattgtatgttctgatccatttatgcagtataatagtttgcttgcaagaatgtaaataatacaaactggattagcaagaacagggatattgctggc |
571 |
Q |
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| T |
10031458 |
ctttcattgtatgttctgatcca-ttatgcaatataatagtttgcttgcaagaatgtaaataatacaaactgggttagcaagaacagggatattgctggc |
10031360 |
T |
|
| Q |
572 |
ttgtgagtgggaagaagttcgtccggatgtagtggttagtgttcacctttacctcttatatatcttgtatctctttattcatcccatgtaattcgctaaa |
671 |
Q |
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| T |
10031359 |
ttgtgagcgggaagaagttcgtccggatgtagtggttagtgttcacctttacctcttatatattctgtatctctttattcatcccatgtaattcgctaaa |
10031260 |
T |
|
| Q |
672 |
aacaacatcctggctataatcacttttgctggagggaatgatcaagaagaaacacagtgatcaatggacatttagtatcatctctgctgtaaattctatg |
771 |
Q |
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| T |
10031259 |
aacaacatcctggctataatcacttttgctggagggaatgatcaagaagaaacacagtgatcaatggacatttagtatcatctctgctgtaaattctatg |
10031160 |
T |
|
| Q |
772 |
catctgatagtaactttttattnnnnnnnntcattcatttagtgatttgggaatgcatcctacctattgattatgttatagaacatgttcatactgtttt |
871 |
Q |
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| T |
10031159 |
catctgatagtatctttttattaaaaaaaatcattcatttagtgattt-ggaatgcatcctacctattgattatgttatagaacatgttcatactgtttt |
10031061 |
T |
|
| Q |
872 |
cgcaaggattcttttgctatttattatactgaaacttattgtttttcattttcac-tttacacaaatgagtgtaggaaatttgatg-tttgttcgaa-tg |
968 |
Q |
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| T |
10031060 |
cgcaaggattcttttgcttcttattatactgaaacttattgtttttccttttcacttttacaaaaatgagtgtaggaaagttgatgttttgttcgaattg |
10030961 |
T |
|
| Q |
969 |
actac-agaaatgaaagtttataggca |
994 |
Q |
| |
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| T |
10030960 |
actacaagaaatgaaagtttataggca |
10030934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 5e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 740 - 956
Target Start/End: Complemental strand, 35086409 - 35086200
Alignment:
| Q |
740 |
catttagtatcatctctgctgtaaattctatgcatctgatagtaactttttattnnnnnnnntcattcatttagtgatttgggaatgcatcctacctatt |
839 |
Q |
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| T |
35086409 |
catttggtatcatctctgctgtaaattatatgcatctgatagtaactttttattaaaaaaaatcattcatttagtgatttgg--atgcatcctacctttt |
35086312 |
T |
|
| Q |
840 |
gattatgttatagaacatgttcatactgttttcgcaaggattcttttgctatttattatactgaaacttattgtttttcattttcactttacacaaatga |
939 |
Q |
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| T |
35086311 |
gattatcttatagaacatgttcatactgttttcgcaaggattcttttgcttcttattatgctgaaacttattgtttttccttttc-----acacaaatga |
35086217 |
T |
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| Q |
940 |
gtgtaggaaatttgatg |
956 |
Q |
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| T |
35086216 |
gtgtagaaaagttgatg |
35086200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 682 - 742
Target Start/End: Original strand, 47514279 - 47514339
Alignment:
| Q |
682 |
tggctataatcacttttgctggagggaatgatcaagaagaaacacagtgatcaatggacat |
742 |
Q |
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| T |
47514279 |
tggctataatcactttcgttggagggaatgatcaagaagaaacagagcgatcaatggacat |
47514339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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