View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4870-Insertion-4 (Length: 825)
Name: NF4870-Insertion-4
Description: NF4870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4870-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 802; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 802; E-Value: 0
Query Start/End: Original strand, 8 - 825
Target Start/End: Original strand, 42215244 - 42216061
Alignment:
| Q |
8 |
ctttgattcagctggaagttgacaacaatgctattactggtgagattccttctgttattggcaacttgagaagcttgactctcttctttgcatggaagaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42215244 |
ctttgattcagctggaagttgacaacaatgctattactggtgagattccttctgttattggcaacttgagaaacttgactctcttctttgcatggaagaa |
42215343 |
T |
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| Q |
108 |
caagctaacaggaaaaatcccaaatagtctttcagagtgtcaaaatcttcaggcacttgatctttcatacaacaacctaactggttcgataccaaaacaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215344 |
caagctaacaggaaaaatcccaaatagtctttcagagtgtcaaaatcttcaggcacttgatctttcatacaacaacctaactggttcgataccaaaacaa |
42215443 |
T |
|
| Q |
208 |
ctatttgtgttgaggaatctaactcagcttatgcttatttccaatgatttggaaggattaataccacctgatataggtaactgcacaagtctctacagat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215444 |
ctatttgtgttgaggaatctaactcagcttatgcttatttccaatgatttggaaggattaataccacctgatataggtaactgcacaagtctctacagat |
42215543 |
T |
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| Q |
308 |
tgaggttaaatcagaatagattggttggtaccattccatctgaaattgccaacttgaagaacttgaattttttggacttgcactacaatcatcttgtagg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215544 |
tgaggttaaatcagaatagattggttggtaccattccatctgaaattgccaacttgaagaacttgaattttttggacttgcactacaatcatcttgtagg |
42215643 |
T |
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| Q |
408 |
ggagattccatctcagttctctggtcttagcaaacttggagtgcttgatctctcccacaacaagctctcagggaatttagatgctctttctaaccttcat |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42215644 |
ggagattccatctcagttctctggtcttagcaaacttggagtgcttgatctctcccacaacaagctctcagggaatttagatgctatttctaaccttcat |
42215743 |
T |
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| Q |
508 |
aatcttgtttctttaaatgtttccttcaatgaattctctggtgaattgcctaactcaccattctttaggaaactccctttcagtgatctcactggaaata |
607 |
Q |
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| T |
42215744 |
aatcttgtttctttaaatgtttccttcaatgaattctctggtgaattgcctaactcaccattctttaggaaactccctttcagtgatctcactggaaata |
42215843 |
T |
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| Q |
608 |
aaggtcttcacattcctgatgatgttgcaactccagctaacagaacaagagccaaatgtcgtgttagattagatatggagattatattgctcattctctt |
707 |
Q |
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| T |
42215844 |
aaggtcttcacattcctgatggtgttgcaactccagctaacagaacaagagccaaatgtcgtgttagattagatatggagattatattgctcattctctt |
42215943 |
T |
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| Q |
708 |
gagcatcagtgcagtactaatacttctcacaatctatgttctggttcgtgctcatgttgctgacgaagcattcatgagaaataacaattcggtgacgact |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42215944 |
gagcatcagtgcagtactaatacttctcacaatctatgttctggttcgtgctcatgttgctgacgaagcattcatgagaaataacaattcggtgacaact |
42216043 |
T |
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| Q |
808 |
ttgtatgagaagtttgga |
825 |
Q |
| |
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|||||||||||||||||| |
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| T |
42216044 |
ttgtatgagaagtttgga |
42216061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 24156665 - 24156952
Alignment:
| Q |
8 |
ctttgattcagctggaagttgacaacaatgctattactggtgagattccttctgttattggcaacttgagaagcttgactctcttctttgcatggaagaa |
107 |
Q |
| |
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|||||| ||| || ||| |||||||||||||| | ||||||||||||||| || |||||||||| ||||||| ||||| | | |||||||||||| |||| |
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| T |
24156665 |
ctttgactcaacttgaaattgacaacaatgctctcactggtgagattcctcctcttattggcaatttgagaaacttgaatttgttctttgcatggcagaa |
24156764 |
T |
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| Q |
108 |
caagctaacaggaaaaatcccaaatagtctttcagagtgtcaaaatcttcaggcacttgatctttcatacaacaacctaactggttcgataccaaaacaa |
207 |
Q |
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|||| ||||||||||||||||| ||||||||||||| |||||| | |||||| ||||||||||||||||||| || | | |||| | ||||||||| | |
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| T |
24156765 |
caagttaacaggaaaaatcccagatagtctttcagattgtcaagaacttcagtcacttgatctttcatacaataatttgattggtccaataccaaaaaca |
24156864 |
T |
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| Q |
208 |
ctatttgtgttgaggaatctaactcagcttatgcttatttccaatgatttggaaggattaataccacctgatataggtaactgcacaa |
295 |
Q |
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| T |
24156865 |
ctttttaatttgaggaatctcacaaaacttttgcttatttccaatgatttgtcaggctttataccacctgatataggaaactgcacaa |
24156952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 412 - 621
Target Start/End: Original strand, 24157426 - 24157635
Alignment:
| Q |
412 |
attccatctcagttctctggtcttagcaaacttggagtgcttgatctctcccacaacaagctctcagggaatttagatgctctttctaaccttcataatc |
511 |
Q |
| |
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|||||||| || |||||| ||||||||||||| | |||||||||||||| || ||||| |||||||||||||||||| |||| ||| ||||||| |||| |
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| T |
24157426 |
attccatcacaattctctagtcttagcaaactaagtgtgcttgatctctcacataacaaactctcagggaatttagatcctctatctgaccttcaaaatc |
24157525 |
T |
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| Q |
512 |
ttgtttctttaaatgtttccttcaatgaattctctggtgaattgcctaactcaccattctttaggaaactccctttcagtgatctcactggaaataaagg |
611 |
Q |
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||||||| ||||||||||||||||||| ||||||||| | || |||||| |||||||||| || |||||| |||||||||| | | |||| |||| |
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| T |
24157526 |
ttgtttccttaaatgtttccttcaatgccttctctggtaagttacctaacacaccattcttccataatctccctctcagtgatcttgccgaaaatgaagg |
24157625 |
T |
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| Q |
612 |
tcttcacatt |
621 |
Q |
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|||| ||||| |
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| T |
24157626 |
tctttacatt |
24157635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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