View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4870-Insertion-5 (Length: 721)
Name: NF4870-Insertion-5
Description: NF4870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4870-Insertion-5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 657; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 8 - 721
Target Start/End: Complemental strand, 43881601 - 43880888
Alignment:
| Q |
8 |
cttcaaagtaagacaaggtagaaaatacttgtcagagtacatgaaacaaaaggaaagcacaccgcataaccacaccgacgtattcaatttacatgaacaa |
107 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43881601 |
cttcaaagtaagacaaagtagaaaatacttgtcagagtacatgaaacaaaagaaaagcacaccgcataaccacaccgacgtattcaatttacatgaacaa |
43881502 |
T |
|
| Q |
108 |
ggtaaattacctgttcagataattctcttgtctccttgttatttcgtgcagctcctagttcaactgaggaaactctctcagcaaactttaaagtactcaa |
207 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43881501 |
ggtaaattacctgttcagataattctctcgtctccttgttatttcgtgcagctcctagttcaactgaggaaactctctcagcaaactttaaagtactcaa |
43881402 |
T |
|
| Q |
208 |
agtttcagaatacgaactgacgtccgagttaatctggacaaacatgagagtctttgcttgaccgcctgtgcagtaaaatcaaagacaatattcaaatcaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43881401 |
agtttcagaatacgaactgacgtccgagttaatctggacaaacatgagagtctttgcttgaccgcctgtgcagtaaaatcaaagacaatattccaatcaa |
43881302 |
T |
|
| Q |
308 |
aatctagtagaagcttgaaagagattctaaaccaaaagttaagcagatgaacattgatttaccaagagacgtttgcagaagttgagtaagcttgctgttt |
407 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43881301 |
aatctagtagaagcttgaaagagattctaaaccgaaagttaagcagatgaacattgatttaccaagagacgtttgcagaagttgagtaagcttgctgttt |
43881202 |
T |
|
| Q |
408 |
ctatatggtacatggggactcttttgagaaagggcaaagattacatctccgagggcagaaagtgatttgtttatatgttgtgcttccttaagtctatccc |
507 |
Q |
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| T |
43881201 |
ctatatggtacatggggactcttttgagaaagggcaaagattacatctccgagggcagaaagtgatttgtttatatgttgtgcttccttaagtctatccc |
43881102 |
T |
|
| Q |
508 |
cggttacatcagatcgatcgactctttcacttccggccaaatctaccaaatgaagattaccatgcatagtagaaccagacttgaagtcctttccgcgaac |
607 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
43881101 |
cggttacatcagatcgatctactctttcacttccggccaaatctaccaaatgaagattaccatgcatagtagaaccagacttgaaatcctttccacgaac |
43881002 |
T |
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| Q |
608 |
atgaattgagaccacactgtgcacgtaaagtttatacatgtcatcataataaaaagctttcatttcaaggaaagnnnnnnntgatttaacctgtgagaac |
707 |
Q |
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| T |
43881001 |
atgaattgagaccacactgtgcacgtaaagtttatacatgtcatcataataaaaagctttcatttcagggaaagaaaaaaatgatttaacctgtgagaac |
43880902 |
T |
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| Q |
708 |
ggctacttctttca |
721 |
Q |
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|||||||||||||| |
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| T |
43880901 |
ggctacttctttca |
43880888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 384 - 541
Target Start/End: Original strand, 40982356 - 40982513
Alignment:
| Q |
384 |
agaagttgagtaagcttgctgtttctatatggtacatggggactcttttgagaaagggcaaagattacatctccgagggcagaaagtgatttgtttatat |
483 |
Q |
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||||||||||| | ||||| ||||||||||| ||||| || |||||||||| || ||||| || |||||||| || ||||| |||||||||||||||| |
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| T |
40982356 |
agaagttgagtcaatttgctatttctatatggcacatgtgggctcttttgagccagagcaaatataacatctccaagtgcagatagtgatttgtttatat |
40982455 |
T |
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| Q |
484 |
gttgtgcttccttaagtctatccccggttacatcagatcgatcgactctttcacttcc |
541 |
Q |
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| || || |||||||| ||||| ||||| | ||||| ||||| |||||||||||||| |
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| T |
40982456 |
gctgagcctccttaagcctatctccggtagcttcagagcgatccactctttcacttcc |
40982513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 365 - 568
Target Start/End: Original strand, 31645948 - 31646151
Alignment:
| Q |
365 |
tttaccaagagacgtttgcagaagttgagtaagcttgctgtttctatatggtacatggggactcttttgagaaagggcaaagattacatctccgagggca |
464 |
Q |
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|||||||||||| ||||||| || ||| || |||||||||||||||||||||| ||| | ||||||||||| |||||| || || | |||||| || || |
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| T |
31645948 |
tttaccaagagaggtttgcaaaatttgtgtgagcttgctgtttctatatggtatatgagcactcttttgagcaagggcgaaaatgaaatctccaagagct |
31646047 |
T |
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| Q |
465 |
gaaagtgatttgtttatatgttgtgcttccttaagtctatccccggttacatcagatcgatcgactctttcacttccggccaaatctaccaaatgaagat |
564 |
Q |
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|| | ||||||||| ||||||||||||||||| |||| ||| |||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||| |
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| T |
31646048 |
gacaatgatttgttaatatgttgtgcttcctttagtcaatctccggttacttcagaacgatctatcctttcacttccggccaaatctaccaaatgaagat |
31646147 |
T |
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| Q |
565 |
tacc |
568 |
Q |
| |
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|||| |
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| T |
31646148 |
tacc |
31646151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 270
Target Start/End: Original strand, 31645559 - 31645653
Alignment:
| Q |
176 |
gaaactctctcagcaaactttaaagtactcaaagtttcagaatacgaactgacgtccgagttaatctggacaaacatgagagtctttgcttgacc |
270 |
Q |
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||||| || ||||||||||||||||||||||||| |||||| || || | | ||| || ||||| ||||| |||||||| |||||||| ||||| |
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| T |
31645559 |
gaaaccctttcagcaaactttaaagtactcaaagattcagagtaagactttatgtctgaattaatttggactaacatgagtgtctttgcatgacc |
31645653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 457
Target Start/End: Complemental strand, 31380756 - 31380664
Alignment:
| Q |
365 |
tttaccaagagacgtttgcagaagttgagtaagcttgctgtttctatatggtacatggggactcttttgagaaagggcaaagattacatctcc |
457 |
Q |
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||||||||||| ||||||| || ||| || ||||||||||||| |||||||| ||| ||||||||||| |||||| || || |||||||| |
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| T |
31380756 |
tttaccaagaggggtttgcaaaatttgtgtgagcttgctgtttcgatatggtatatgaacactcttttgagcaagggcgaaaataacatctcc |
31380664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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