View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4870-Insertion-8 (Length: 479)

Name: NF4870-Insertion-8
Description: NF4870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4870-Insertion-8
NF4870-Insertion-8
[»] chr4 (1 HSPs)
chr4 (6-479)||(56492445-56492918)


Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 6 - 479
Target Start/End: Complemental strand, 56492918 - 56492445
Alignment:
Q  6 catatctagcagcagcggtgtaaagaacaccgaaatctcctctaacagatagagggggaagagccattgcagctgtagacaagggaagtacagcatccaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56492918 catatctagcagcagcggtgtaaagaacaccgaaatctcctctaacagatagagggggaagagccattgcagctgtagacaagggaagtacagcatccaa 56492819  T
Q  106 aagcttctgccattcttgaacagcttcaggacctgcatagttgtgaaggtcctttaaaaactcagtaggacctatgcgtgacaagaaatcagcttcaggt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56492818 aagcttctgccattcttgaacagcttcaggacctgcatagttgtgaaggtcctttaaaaactcagtaggacctatgcgtgacaagaaatcagcttcaggt 56492719  T
Q  206 acatggaccatccatgaatcataagtagcgcaggggacggactctcccaaagcatcaagaacttgagcaagagggttagcctgtggacctcttgactgca 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56492718 acatggaccatccatgaatcataagtagcgcaggggacggactctcccaaagcatcaagaacttgagcaagagggttagcctgtggacctcttgactgca 56492619  T
Q  306 aaccagagaataatgatggaccggaatcaaacttatagcctttgacatcaaaagaatgagcagcacctccagcatggtcgtggctttcgaaaacgacaac 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56492618 aaccagagaataatgatggaccggaatcaaacttatagcctttgacatcaaaagaatgagcagcacctccagcatggtcgtggctttcgaaaacgacaac 56492519  T
Q  406 atcttgttcatatcttgccaacagtgctgcacaactcagtccaccaataccactcccaatcacaattacatctg 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56492518 atcttgttcatatcttgccaacagtgctgcacaactcagtccaccaataccactcccaatcacaattacatctg 56492445  T

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