View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4870_high_7 (Length: 216)

Name: NF4870_high_7
Description: NF4870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4870_high_7
NF4870_high_7
[»] chr2 (15 HSPs)
chr2 (1-216)||(11072975-11073190)
chr2 (176-211)||(33321329-33321364)
chr2 (176-211)||(36501532-36501567)
chr2 (177-211)||(25836730-25836764)
chr2 (176-209)||(4026961-4026994)
chr2 (176-209)||(33321420-33321453)
chr2 (176-211)||(12223886-12223921)
chr2 (180-211)||(39592283-39592314)
chr2 (175-205)||(1120325-1120355)
chr2 (178-211)||(38216053-38216086)
chr2 (179-211)||(887446-887478)
chr2 (179-211)||(12442847-12442879)
chr2 (178-210)||(13056346-13056378)
chr2 (175-211)||(21788491-21788527)
chr2 (175-211)||(44475539-44475575)
[»] chr8 (8 HSPs)
chr8 (176-213)||(10298943-10298980)
chr8 (176-211)||(35168458-35168493)
chr8 (175-211)||(28879092-28879128)
chr8 (175-211)||(32975721-32975757)
chr8 (176-211)||(14709553-14709588)
chr8 (178-211)||(38895693-38895726)
chr8 (179-211)||(34286583-34286615)
chr8 (175-211)||(41145411-41145447)
[»] chr3 (10 HSPs)
chr3 (175-211)||(53218056-53218092)
chr3 (175-210)||(3870242-3870277)
chr3 (176-211)||(43079951-43079986)
chr3 (177-211)||(22809211-22809245)
chr3 (178-211)||(52421160-52421193)
chr3 (176-211)||(34707730-34707765)
chr3 (178-207)||(40581096-40581125)
chr3 (178-211)||(52021280-52021313)
chr3 (175-211)||(40240593-40240629)
chr3 (175-211)||(51409427-51409463)
[»] chr1 (17 HSPs)
chr1 (175-211)||(4068149-4068185)
chr1 (175-211)||(37712101-37712137)
chr1 (176-211)||(3069871-3069906)
chr1 (176-211)||(6337773-6337808)
chr1 (176-211)||(23544825-23544860)
chr1 (176-211)||(26988182-26988217)
chr1 (176-211)||(48819333-48819368)
chr1 (178-211)||(15515366-15515399)
chr1 (175-211)||(26946120-26946156)
chr1 (176-211)||(37329429-37329464)
chr1 (176-211)||(41196727-41196762)
chr1 (176-210)||(35590165-35590199)
chr1 (178-211)||(1565401-1565434)
chr1 (176-209)||(18327560-18327593)
chr1 (175-211)||(9572800-9572836)
chr1 (175-211)||(13038981-13039017)
chr1 (175-211)||(39941544-39941580)
[»] chr5 (19 HSPs)
chr5 (176-211)||(3977509-3977544)
chr5 (176-211)||(28625514-28625549)
chr5 (176-211)||(41419535-41419570)
chr5 (176-210)||(12987031-12987065)
chr5 (176-210)||(13060619-13060653)
chr5 (178-211)||(12467298-12467331)
chr5 (175-211)||(2577445-2577481)
chr5 (175-211)||(42852056-42852092)
chr5 (176-211)||(24030249-24030284)
chr5 (180-211)||(29922210-29922241)
chr5 (176-211)||(40452495-40452530)
chr5 (176-211)||(41534657-41534692)
chr5 (177-207)||(39154779-39154809)
chr5 (182-211)||(22201959-22201988)
chr5 (176-209)||(35536881-35536914)
chr5 (178-211)||(42706830-42706863)
chr5 (179-211)||(1868880-1868912)
chr5 (178-210)||(5559941-5559973)
chr5 (175-207)||(17868192-17868224)
[»] chr4 (16 HSPs)
chr4 (176-211)||(17222863-17222898)
chr4 (176-211)||(28663607-28663642)
chr4 (176-211)||(35124421-35124456)
chr4 (178-211)||(28074399-28074432)
chr4 (175-208)||(40699393-40699426)
chr4 (175-211)||(212964-213000)
chr4 (175-211)||(897004-897040)
chr4 (179-211)||(21216348-21216380)
chr4 (175-211)||(41228937-41228973)
chr4 (176-211)||(7148806-7148841)
chr4 (176-211)||(43699500-43699535)
chr4 (176-211)||(48591441-48591476)
chr4 (177-211)||(1374381-1374415)
chr4 (178-207)||(488403-488432)
chr4 (178-211)||(29997329-29997362)
chr4 (179-211)||(3564254-3564286)
[»] chr6 (8 HSPs)
chr6 (177-211)||(8014822-8014856)
chr6 (178-211)||(25430785-25430818)
chr6 (175-211)||(7267809-7267845)
chr6 (176-211)||(13429489-13429524)
chr6 (152-180)||(507330-507358)
chr6 (175-207)||(2034245-2034277)
chr6 (175-211)||(21891354-21891390)
chr6 (179-211)||(24625885-24625917)
[»] chr7 (9 HSPs)
chr7 (178-210)||(37779303-37779335)
chr7 (175-211)||(44613489-44613525)
chr7 (176-211)||(30181584-30181619)
chr7 (182-211)||(40629440-40629469)
chr7 (175-211)||(14691315-14691351)
chr7 (175-211)||(17944687-17944723)
chr7 (175-211)||(20888608-20888644)
chr7 (179-211)||(29390570-29390602)
chr7 (175-211)||(31613681-31613717)
[»] scaffold0024 (1 HSPs)
scaffold0024 (176-211)||(97223-97258)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 11073190 - 11072975
Alignment:
Q  1 cattaccgcgaccactatataaaaccctaatatactaactccaaaacagagtaaaaataagagttgacctaacacccaatgtaatcgttttatctaatnn 100  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  11073190 cattaccgtgaccactatataaaaccctaatatactaactccgaaacagagtaaaaataagagttgacctaacacccaatgtaatcgttttatctaataa 11073091  T
Q  101 nnnnnccctagtgtatataacaagcaatgtgaaattatgcaaacataaaaaacttagggcctgtttggattggcttgttttttcataaactaccttgaca 200  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11073090 aaaaaccctagtgtatataacaagcaatgtgaaattatgcaaacataaaaaacttagggcctgtttggattggcttgttttttcataaactaccttgaca 11072991  T
Q  201 agcttatgaatgaata 216  Q
    ||||||||||||||||    
T  11072990 agcttatgaatgaata 11072975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 33321329 - 33321364
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  33321329 tgttttttcataaactaccttgacaagcttatgaat 33321364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 36501532 - 36501567
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  36501532 tgttttttcataaactaccttgacaagcttatgaat 36501567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 25836730 - 25836764
Alignment:
Q  177 gttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||||||||||||||||    
T  25836730 gttttttcataaactaccttgacaagcttatgaat 25836764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 4026994 - 4026961
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatga 209  Q
    ||||||||||||||||||||||||||||||||||    
T  4026994 tgttttttcataaactaccttgacaagcttatga 4026961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 33321420 - 33321453
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatga 209  Q
    ||||||||||||||||||||||||||||||||||    
T  33321420 tgttttttcataaactaccttgacaagcttatga 33321453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 12223921 - 12223886
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12223921 tgttttttcataaactaccttgacaggcttatgaat 12223886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Complemental strand, 39592314 - 39592283
Alignment:
Q  180 ttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||    
T  39592314 ttttcataaactaccttgacaagcttatgaat 39592283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 1120355 - 1120325
Alignment:
Q  175 ttgttttttcataaactaccttgacaagctt 205  Q
    |||||||||||||||||||||||||||||||    
T  1120355 ttgttttttcataaactaccttgacaagctt 1120325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 38216086 - 38216053
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||| ||||||||||||||||||||||||||    
T  38216086 ttttttcctaaactaccttgacaagcttatgaat 38216053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 887478 - 887446
Alignment:
Q  179 tttttcataaactaccttgacaagcttatgaat 211  Q
    |||| ||||||||||||||||||||||||||||    
T  887478 ttttacataaactaccttgacaagcttatgaat 887446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 12442879 - 12442847
Alignment:
Q  179 tttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||| ||||||||||||||||||    
T  12442879 tttttcataaactatcttgacaagcttatgaat 12442847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 13056346 - 13056378
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaa 210  Q
    |||||| ||||||||||||||||||||||||||    
T  13056346 tttttttataaactaccttgacaagcttatgaa 13056378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 21788527 - 21788491
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  21788527 ttgttttttcataaactatcttaacaagcttatgaat 21788491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 44475539 - 44475575
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  44475539 ttgttttttcataaactacattgataagcttatgaat 44475575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 10298943 - 10298980
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaatga 213  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10298943 tgttttttcataaactaccttgacaagcttatgaatga 10298980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 35168458 - 35168493
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  35168458 tgttttttcataaactaccttgacaagcttatgaat 35168493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 28879128 - 28879092
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||| |||||||||||||||||||||||||||||||    
T  28879128 ttgttatttcataaactaccttgacaagcttatgaat 28879092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 32975757 - 32975721
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||| ||||||||||||||||||||||||||||||||    
T  32975757 ttgtgttttcataaactaccttgacaagcttatgaat 32975721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 14709553 - 14709588
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||| ||||||||||||||||||    
T  14709553 tgttttttcataaactagcttgacaagcttatgaat 14709588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 38895726 - 38895693
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||| ||||||||||||||    
T  38895726 ttttttcataaactaccttaacaagcttatgaat 38895693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 34286583 - 34286615
Alignment:
Q  179 tttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||| |||||||||||||||||||||||||    
T  34286583 tttttcacaaactaccttgacaagcttatgaat 34286615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 41145411 - 41145447
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||| |||| |||||||||    
T  41145411 ttgttttttcataaactaccttaacaaacttatgaat 41145447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 53218056 - 53218092
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||||||||||||||||||    
T  53218056 ttgttttttcataaactaccttgacaagcttatgaat 53218092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 3870242 - 3870277
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaa 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  3870242 ttgttttttcataaactaccttgacaagcttatgaa 3870277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 43079951 - 43079986
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  43079951 tgttttttcataaactaccttgacaagcttatgaat 43079986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 22809211 - 22809245
Alignment:
Q  177 gttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||||||||||||||||    
T  22809211 gttttttcataaactaccttgacaagcttatgaat 22809245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 52421160 - 52421193
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||    
T  52421160 ttttttcataaactaccttgacaagcttatgaat 52421193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 34707730 - 34707765
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||| ||||||||||||||    
T  34707730 tgttttttcataaactaccttaacaagcttatgaat 34707765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 207
Target Start/End: Original strand, 40581096 - 40581125
Alignment:
Q  178 ttttttcataaactaccttgacaagcttat 207  Q
    ||||||||||||||||||||||||||||||    
T  40581096 ttttttcataaactaccttgacaagcttat 40581125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 52021313 - 52021280
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||||| |||||||||    
T  52021313 ttttttcataaactaccttgacaatcttatgaat 52021280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 40240593 - 40240629
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  40240593 ttgttttttcataaactacctagacacgcttatgaat 40240629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 51409463 - 51409427
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||| || ||||||    
T  51409463 ttgttttttcataaactaccttgacaaactcatgaat 51409427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 4068185 - 4068149
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||||||||||||||||||    
T  4068185 ttgttttttcataaactaccttgacaagcttatgaat 4068149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 37712137 - 37712101
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||||||||||||||||||    
T  37712137 ttgttttttcataaactaccttgacaagcttatgaat 37712101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 3069871 - 3069906
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  3069871 tgttttttcataaactaccttgacaagcttatgaat 3069906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 6337773 - 6337808
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  6337773 tgttttttcataaactaccttgacaagcttatgaat 6337808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 23544860 - 23544825
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  23544860 tgttttttcataaactaccttgacaagcttatgaat 23544825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 26988217 - 26988182
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  26988217 tgttttttcataaactaccttgacaagcttatgaat 26988182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 48819368 - 48819333
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  48819368 tgttttttcataaactaccttgacaagcttatgaat 48819333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 15515366 - 15515399
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||    
T  15515366 ttttttcataaactaccttgacaagcttatgaat 15515399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 26946120 - 26946156
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||| ||||||||||||||    
T  26946120 ttgttttttcataaactaccttaacaagcttatgaat 26946156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 37329429 - 37329464
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||| ||||||||    
T  37329429 tgttttttcataaactaccttgacaagtttatgaat 37329464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 41196727 - 41196762
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||| |||||||||||||||||    
T  41196727 tgttttttcataaactacattgacaagcttatgaat 41196762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 35590199 - 35590165
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaa 210  Q
    ||||||||||||||| |||||||||||||||||||    
T  35590199 tgttttttcataaacaaccttgacaagcttatgaa 35590165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 1565401 - 1565434
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||| ||||    
T  1565401 ttttttcataaactaccttgacaagcttacgaat 1565434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 18327593 - 18327560
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatga 209  Q
    ||||||||||||||||| ||||||||||||||||    
T  18327593 tgttttttcataaactatcttgacaagcttatga 18327560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 9572800 - 9572836
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||| |||| |||||||||    
T  9572800 ttgttttttcataaactaccttaacaaacttatgaat 9572836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 13039017 - 13038981
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  13039017 ttgttttttcataaactaccttaacaagctcatgaat 13038981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 39941580 - 39941544
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||| |||||| |||||||||||||||||    
T  39941580 ttgttttttcattaactactttgacaagcttatgaat 39941544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 3977544 - 3977509
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  3977544 tgttttttcataaactaccttgacaagcttatgaat 3977509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 28625549 - 28625514
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  28625549 tgttttttcataaactaccttgacaagcttatgaat 28625514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 41419570 - 41419535
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  41419570 tgttttttcataaactaccttgacaagcttatgaat 41419535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 12987031 - 12987065
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaa 210  Q
    |||||||||||||||||||||||||||||||||||    
T  12987031 tgttttttcataaactaccttgacaagcttatgaa 12987065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 13060619 - 13060653
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaa 210  Q
    |||||||||||||||||||||||||||||||||||    
T  13060619 tgttttttcataaactaccttgacaagcttatgaa 13060653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 12467331 - 12467298
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||    
T  12467331 ttttttcataaactaccttgacaagcttatgaat 12467298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 2577445 - 2577481
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||| |||||||||||||||||||||    
T  2577445 ttgttttttcataaattaccttgacaagcttatgaat 2577481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 42852092 - 42852056
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||| ||||||||||||||||||    
T  42852092 ttgttttttcataaactatcttgacaagcttatgaat 42852056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 24030284 - 24030249
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||| |||||||||||||||||    
T  24030284 tgttttttcataaactactttgacaagcttatgaat 24030249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 29922210 - 29922241
Alignment:
Q  180 ttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||    
T  29922210 ttttcataaactaccttgacaagcttatgaat 29922241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 40452495 - 40452530
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||| ||||||||||||||||||||||||||||||    
T  40452495 tgtttcttcataaactaccttgacaagcttatgaat 40452530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 41534692 - 41534657
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||| ||||||||||||||||||||||||||    
T  41534692 tgttttttcgtaaactaccttgacaagcttatgaat 41534657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Original strand, 39154779 - 39154809
Alignment:
Q  177 gttttttcataaactaccttgacaagcttat 207  Q
    |||||||||||||||||||||||||||||||    
T  39154779 gttttttcataaactaccttgacaagcttat 39154809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 211
Target Start/End: Original strand, 22201959 - 22201988
Alignment:
Q  182 ttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||    
T  22201959 ttcataaactaccttgacaagcttatgaat 22201988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 35536914 - 35536881
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatga 209  Q
    ||||||||||||||||| ||||||||||||||||    
T  35536914 tgttttttcataaactatcttgacaagcttatga 35536881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 42706863 - 42706830
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||| |||||||||||||||||||||||||||    
T  42706863 tttttttataaactaccttgacaagcttatgaat 42706830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 1868912 - 1868880
Alignment:
Q  179 tttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||| |||||    
T  1868912 tttttcataaactaccttgacaagcttgtgaat 1868880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 5559941 - 5559973
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaa 210  Q
    |||||||||||||||||||||| ||||||||||    
T  5559941 ttttttcataaactaccttgacgagcttatgaa 5559973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 17868192 - 17868224
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttat 207  Q
    |||||||| ||||||||||||||||||||||||    
T  17868192 ttgtttttccataaactaccttgacaagcttat 17868224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 17222898 - 17222863
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  17222898 tgttttttcataaactaccttgacaagcttatgaat 17222863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 28663642 - 28663607
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  28663642 tgttttttcataaactaccttgacaagcttatgaat 28663607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 35124456 - 35124421
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  35124456 tgttttttcataaactaccttgacaagcttatgaat 35124421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 28074432 - 28074399
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||    
T  28074432 ttttttcataaactaccttgacaagcttatgaat 28074399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 40699426 - 40699393
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatg 208  Q
    ||||||||||||||||||||||||||||||||||    
T  40699426 ttgttttttcataaactaccttgacaagcttatg 40699393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 212964 - 213000
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||| ||||||||||||||    
T  212964 ttgttttttcataaactaccttaacaagcttatgaat 213000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 897040 - 897004
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||| |||||||||||||||||    
T  897040 ttgttttttcataaactacattgacaagcttatgaat 897004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 21216348 - 21216380
Alignment:
Q  179 tttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||||||||||||||    
T  21216348 tttttcataaactaccttgacaagcttatgaat 21216380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 41228973 - 41228937
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||| ||||||||||||||    
T  41228973 ttgttttttcataaactaccttaacaagcttatgaat 41228937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 7148841 - 7148806
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||| |||||||||||||||||||||||||    
T  7148841 tgttttttcaaaaactaccttgacaagcttatgaat 7148806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 43699500 - 43699535
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||| |||||||||||||||||    
T  43699500 tgttttttcataaactacattgacaagcttatgaat 43699535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 48591441 - 48591476
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||||||||| |||||||    
T  48591441 tgttttttcataaactaccttgacaagcgtatgaat 48591476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 1374381 - 1374415
Alignment:
Q  177 gttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||| ||||||||||||||||    
T  1374381 gttttttcataaactaccatgacaagcttatgaat 1374415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 207
Target Start/End: Original strand, 488403 - 488432
Alignment:
Q  178 ttttttcataaactaccttgacaagcttat 207  Q
    ||||||||||||||||||||||||||||||    
T  488403 ttttttcataaactaccttgacaagcttat 488432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 29997329 - 29997362
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||| ||||||||||||    
T  29997329 ttttttcataaactaccttgataagcttatgaat 29997362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 3564286 - 3564254
Alignment:
Q  179 tttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||| |||||||||    
T  3564286 tttttcataaactaccttgacaaacttatgaat 3564254  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 8014856 - 8014822
Alignment:
Q  177 gttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||||||||||||||||    
T  8014856 gttttttcataaactaccttgacaagcttatgaat 8014822  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 25430785 - 25430818
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||||||    
T  25430785 ttttttcataaactaccttgacaagcttatgaat 25430818  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 7267845 - 7267809
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7267845 ttgttttttcataaactaccttggcaagcttatgaat 7267809  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 13429524 - 13429489
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||| |||||||||||||||||    
T  13429524 tgttttttcataaactactttgacaagcttatgaat 13429489  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 507358 - 507330
Alignment:
Q  152 acttagggcctgtttggattggcttgttt 180  Q
    |||||||||||||||||||||||||||||    
T  507358 acttagggcctgtttggattggcttgttt 507330  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 2034245 - 2034277
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttat 207  Q
    ||||||||||||||||||||||||||| |||||    
T  2034245 ttgttttttcataaactaccttgacaaacttat 2034277  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 21891354 - 21891390
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  21891354 ttgttatttcataaactacattgacaagcttatgaat 21891390  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 24625917 - 24625885
Alignment:
Q  179 tttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||| ||||||||||||||    
T  24625917 tttttcataaactaccttaacaagcttatgaat 24625885  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 37779303 - 37779335
Alignment:
Q  178 ttttttcataaactaccttgacaagcttatgaa 210  Q
    |||||||||||||||||||||||||||||||||    
T  37779303 ttttttcataaactaccttgacaagcttatgaa 37779335  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 44613489 - 44613525
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||| ||||||||||||||    
T  44613489 ttgttttttcataaactaccttaacaagcttatgaat 44613525  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 30181619 - 30181584
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||| |||||||||||||||||||||||||||    
T  30181619 tgttttttgataaactaccttgacaagcttatgaat 30181584  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 211
Target Start/End: Original strand, 40629440 - 40629469
Alignment:
Q  182 ttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||||||||||    
T  40629440 ttcataaactaccttgacaagcttatgaat 40629469  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 14691315 - 14691351
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  14691315 ttgttttttcataaattacattgacaagcttatgaat 14691351  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 17944723 - 17944687
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||  |||||||||||||||||||||||||||    
T  17944723 ttgtttttctataaactaccttgacaagcttatgaat 17944687  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 20888644 - 20888608
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||||||  |||||||||||||    
T  20888644 ttgttttttcataaactacctttgcaagcttatgaat 20888608  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 29390570 - 29390602
Alignment:
Q  179 tttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||| ||||||||||||||    
T  29390570 tttttcataaactacctttacaagcttatgaat 29390602  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 31613681 - 31613717
Alignment:
Q  175 ttgttttttcataaactaccttgacaagcttatgaat 211  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  31613681 ttgttttttcataaactacattgacaagctaatgaat 31613717  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 97223 - 97258
Alignment:
Q  176 tgttttttcataaactaccttgacaagcttatgaat 211  Q
    |||||||||||||||||||||||| |||||||||||    
T  97223 tgttttttcataaactaccttgactagcttatgaat 97258  T

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