View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4870_low_2 (Length: 544)
Name: NF4870_low_2
Description: NF4870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4870_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 45694331 - 45694839
Alignment:
| Q |
1 |
cgtccatgatcagttcttttaacaccgattgattcatcctcaaaatcctacaaattaacnnnnnnn--ttgattatagtagaacacaataaaataagcca |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
45694331 |
cgtccatgatcagttcttttaacaccgattgattcatcctcaaaatcctataaattaacaaaaaaaaattgattatagtagaacacaataaaataagcca |
45694430 |
T |
|
| Q |
99 |
tactcataagataattcaagaaataggacaacttaattataagatatttacttcactgtgccactcagaatcctcagagtccagattttttcgcttcaaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45694431 |
tactcataagataattcaagaaataggacaacttaattataagatatttacttcactgtgccactcagaatcctcagagtccagattttttcgcttcaaa |
45694530 |
T |
|
| Q |
199 |
ttttgattagcatcatctgaacttctatgcacgccattgtcagagcaaacagaggaagaggctactgttagctccgtacattttttaaaaacttcttgac |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45694531 |
ttttgattagcatcatctgaacttctatgcacgccattgtcagagcaaacagaggaagaggctactgttagctccgtacattttttaaaaacttcttgac |
45694630 |
T |
|
| Q |
299 |
cttttctgctactctcactaagaacttgattggaagtttgatcaactttggatacatcttctttgcaagcagaagtagaaacagtagtgtttttctcaag |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45694631 |
cttttctgctactctcactaagaacttgattggaagtttgatcaactttggatacatcttctttgcaagcagaagtagaaacagtagtgtttttctcaag |
45694730 |
T |
|
| Q |
399 |
agatttcggctccaaaggtttcaaaccaaccctggatggctctactgactgatgacaatgtatggctgaactctttggacattctccacttaaatcaact |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45694731 |
agatttcggctccaaaggtttcaaaccaaccctggatggctccactgactgatgacaatgtatggctgaactctttggacattctacacttaaatcaact |
45694830 |
T |
|
| Q |
499 |
tttgatgat |
507 |
Q |
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||||||||| |
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| T |
45694831 |
tttgatgat |
45694839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 443
Target Start/End: Complemental strand, 37934670 - 37934621
Alignment:
| Q |
394 |
tcaagagatttcggctccaaaggtttcaaaccaaccctggatggctctac |
443 |
Q |
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||||| |||||||||| ||||||||||||| || || ||||||||||||| |
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| T |
37934670 |
tcaagcgatttcggctgcaaaggtttcaaatcagccttggatggctctac |
37934621 |
T |
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