View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4870_low_4 (Length: 488)
Name: NF4870_low_4
Description: NF4870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4870_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 31411032 - 31410566
Alignment:
| Q |
1 |
gtgtcaacgtgtgttgatttatctatttctttgaatgtggcaaactcaaccaatagcttgggactcaagttcttctattgttgttatgatttgttggagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31411032 |
gtgtcaacgtgtgttgatttatctatttctttgaatgtggcaaactcaaccaatagcttgggactcaagttcttctattgttgttatgatttgttggagt |
31410933 |
T |
|
| Q |
101 |
agttggcaatttttccatgttgcttctgttacacacttatcgttctattctgaatcgtggctttagtgagatcctcttggccattgtacatggccgattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31410932 |
agttggcaatttttccatgttgcttctgttacacacttattattctattctgaatcgtggttttagtgagatcctcttggccattgtacatggccgattt |
31410833 |
T |
|
| Q |
201 |
tctaaagtttgttgtaaagtgcnnnnnnngtttcaagttgattaagtttcccttattcttgtcctgtttgtgttttgtacagttttcccattgtggaacc |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31410832 |
tctaaagtttgttgtaaagtgcattttttgtttcaagttgattaagtttcctttattcttgtcctgtttgtgttttgtacagttttcccattgtggaacc |
31410733 |
T |
|
| Q |
301 |
ggatcctggtcatacaaaactccgtctttcaagagaaggtttagaggctattgagagaataacaaaccccattgcatctgttgcagtatgtttgactgta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31410732 |
ggatcctggtcatacaaaactccgtctttcaagagaaggtttggaggctattgagagaattacaaaccccattgcatctgttgcagtatgtttgactgta |
31410633 |
T |
|
| Q |
401 |
actttaaggcatacattgtctataacttttgattttactttattttaacatgaattttcgcaaactt |
467 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31410632 |
actttaaagcatacattgtctataacttttcattttactttattttaacatgaattttcgcaaactt |
31410566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 276 - 403
Target Start/End: Original strand, 38490549 - 38490676
Alignment:
| Q |
276 |
tgtacagttttcccattgtggaaccggatcctggtcatacaaaactccgtctttcaagagaaggtttagaggctattgagagaataacaaaccccattgc |
375 |
Q |
| |
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||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| ||| || || || |||||||| ||||||||||||||||||||||| |
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| T |
38490549 |
tgtacagatttcccattgtcgaacctgatcctggtcatacaaaacttcgtctatcacaggacggcttggaggctatcgagagaataacaaaccccattgc |
38490648 |
T |
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| Q |
376 |
atctgttgcagtatgtttgactgtaact |
403 |
Q |
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|||||| |||||| ||||||||| |||| |
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| T |
38490649 |
atctgtggcagtaagtttgactgcaact |
38490676 |
T |
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Back To:
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